Click here to switch to the map view.

The map label for this gene is slmA [H]

Identifier: 83718693

GI number: 83718693

Start: 190164

End: 190856

Strand: Reverse

Name: slmA [H]

Synonym: BTH_I0158

Alternate gene names: 83718693

Gene position: 190856-190164 (Counterclockwise)

Preceding gene: 83721500

Following gene: 83719686

Centisome position: 5.01

GC content: 68.69

Gene sequence:

>693_bases
ATGCAGCCGACTCACCCGCAGGACCCGGCAGTAACCGCAGCGGCGGGCGACAAACGCAACGCCGCGAGCCGCGCGCGCCC
GAAACCGGGCGAGCGGCGCGTGCACATCCTGCAGACGCTCGCGTCGATGCTCGAATCGCCGAAGCGCGAGAAGATCACGA
CGGCGGCGCTCGCCGCGCGCCTCGACGTGTCGGAGGCCGCGCTGTACCGGCATTTCTCGAGCAAGGCGCAGATGTTCGAA
GGCCTGATCGAATTCATCGAGGAAACGTTCTTCGGGCTCGTCAACCAGATTGCCGCGAACGAGCCGAACGGCGTGCTGCA
GGCGCGCTCGATCGCGTTGATGCTGCTCAATTTTTCCGCAAGGAATCCCGGCATGACGCGCGTGCTGACGGGCGAGGCGC
TCGTCGGCGAGCACGAGCGCCTCGCCGAGCGCGTCGATCAGATGCTCGAGCGGGTCGAGGCGTCGATCAAGCAATGTCTG
CGCGTCGCGCTCCTCGACGCGAACGCGCGCGCCGACGGAGCCGGCGGCGGCGCGCCGCCGCCCGTGCCGCTGCCGGACGA
CTACGATCCGGCGCTGCGCGCGAGCCTCGTCGTCAGCTACGTGCTCGGGCGCTGGCACCGTTATGCAAAGAGCGGCTTCA
CGAAAGCGCCCGGCGAGCACGCCGACGCGCAATTGCGGCTGATCCTGCAGTAA

Upstream 100 bases:

>100_bases
TGCCCGGTCATCTGCCAAGCTACGGACGACCGCACTATGTCGATCGTCGCATTGGTTCGCTAAAATCGCTGCGATTGGGC
ACTCGATCGGGGCGACGAAA

Downstream 100 bases:

>100_bases
CGCGAAGCGGGGCGGCAACAAGCATCCGGCACGCATCGACGCGCGGGCGACGCCGGACGCGCGGCTCCCCCCTCCGTCGC
CGCGGCGCGGAAATTTTTCC

Product: nucleoid occlusion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MQPTHPQDPAVTAAAGDKRNAASRARPKPGERRVHILQTLASMLESPKREKITTAALAARLDVSEAALYRHFSSKAQMFE
GLIEFIEETFFGLVNQIAANEPNGVLQARSIALMLLNFSARNPGMTRVLTGEALVGEHERLAERVDQMLERVEASIKQCL
RVALLDANARADGAGGGAPPPVPLPDDYDPALRASLVVSYVLGRWHRYAKSGFTKAPGEHADAQLRLILQ

Sequences:

>Translated_230_residues
MQPTHPQDPAVTAAAGDKRNAASRARPKPGERRVHILQTLASMLESPKREKITTAALAARLDVSEAALYRHFSSKAQMFE
GLIEFIEETFFGLVNQIAANEPNGVLQARSIALMLLNFSARNPGMTRVLTGEALVGEHERLAERVDQMLERVEASIKQCL
RVALLDANARADGAGGGAPPPVPLPDDYDPALRASLVVSYVLGRWHRYAKSGFTKAPGEHADAQLRLILQ
>Mature_230_residues
MQPTHPQDPAVTAAAGDKRNAASRARPKPGERRVHILQTLASMLESPKREKITTAALAARLDVSEAALYRHFSSKAQMFE
GLIEFIEETFFGLVNQIAANEPNGVLQARSIALMLLNFSARNPGMTRVLTGEALVGEHERLAERVDQMLERVEASIKQCL
RVALLDANARADGAGGGAPPPVPLPDDYDPALRASLVVSYVLGRWHRYAKSGFTKAPGEHADAQLRLILQ

Specific function: Required for nucleoid occlusion (NO) phenomenon, which cooperates in the proper positioning of the ftsZ/septal ring at midcell during cell division [H]

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082302, Length=198, Percent_Identity=42.9292929292929, Blast_Score=134, Evalue=7e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 25037; Mature: 25037

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPTHPQDPAVTAAAGDKRNAASRARPKPGERRVHILQTLASMLESPKREKITTAALAAR
CCCCCCCCCCEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
LDVSEAALYRHFSSKAQMFEGLIEFIEETFFGLVNQIAANEPNGVLQARSIALMLLNFSA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
RNPGMTRVLTGEALVGEHERLAERVDQMLERVEASIKQCLRVALLDANARADGAGGGAPP
CCCCCEEEEECCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
PVPLPDDYDPALRASLVVSYVLGRWHRYAKSGFTKAPGEHADAQLRLILQ
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEC
>Mature Secondary Structure
MQPTHPQDPAVTAAAGDKRNAASRARPKPGERRVHILQTLASMLESPKREKITTAALAAR
CCCCCCCCCCEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
LDVSEAALYRHFSSKAQMFEGLIEFIEETFFGLVNQIAANEPNGVLQARSIALMLLNFSA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
RNPGMTRVLTGEALVGEHERLAERVDQMLERVEASIKQCLRVALLDANARADGAGGGAPP
CCCCCEEEEECCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
PVPLPDDYDPALRASLVVSYVLGRWHRYAKSGFTKAPGEHADAQLRLILQ
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA