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The map label for this gene is rodA [H]

Identifier: 83718660

GI number: 83718660

Start: 171143

End: 172291

Strand: Reverse

Name: rodA [H]

Synonym: BTH_I0142

Alternate gene names: 83718660

Gene position: 172291-171143 (Counterclockwise)

Preceding gene: 83719503

Following gene: 83719440

Centisome position: 4.52

GC content: 65.01

Gene sequence:

>1149_bases
ATGCAATTCGACAAGCGCGCCTCGCTCGACAAGATCAAGCAGATGTTCGCGGGCTTCGACCGGCCGCTCGCGCTCATCGT
GTTCCTGCTGCTGTGCGTCGGCATCGTCACGCTTTACAGCGCGAGCATCGACATGCCCGGCCGCGTCGAGGACCAGTTGC
GCAACATCATGCTGACGTTCGTGCTGATGTGGGTGATCGCGAACATCCCGCCGCAGACGCTGATGCGCTTCGCCGTGCCG
CTCTATTCGTTCGGCGTCGCGCTGCTCGTCGCGGTCGCGCTATTCGGGATGACGAAGAAGGGCGCGAAGCGCTGGCTGAA
CGTCGGCGTCGTGATCCAGCCGTCCGAGATCCTCAAGATCGCGACGCCGCTGATGCTCGCGTGGTATTACCAGCGGCGCG
AAAGCAGCCTGCGCTGGTACGACTTCGTCGTCGCGTTCGGAATCCTGATGGTGCCCGTCGGACTGATCGCGAAGCAGCCG
GACCTCGGCACCGCCGTCCTCGTGTTCGCGGCGGGTCTCTTCGTGATCTATCTCGCGGGGCTGTCTTACAAGCTGATCGT
GCCCGTGCTCATCGCCGGCGTGCTCGCGGTCGGCTCGATCGCCGTGTTCGAGGAACGCATCTGCCAGCCCGACGTCGTCT
GGCCGCTGATGCACGATTATCAGAAGCACCGCGTCTGCACGCTGCTCGATCCGACGTCCGATCCGCTCGGCAAGGGCTTT
CACACGATCCAGGCGGTGATCGCGATCGGCTCCGGCGGCCCGCTCGGCAAGGGGTATCTGAAGGGCACGCAGGCGCACCT
CGAATTCATTCCGGAAAAGCACACCGACTTCATCTTCGCGGTGTTCTCCGAGGAGTTCGGGCTCGTCGGCGGGCTCGTGC
TGCTGACGCTGTACATGGCGCTGATCGCGCGCGGGCTCTACATCGCCGCGCAGGGCGCGACGCTGTTCGGGCGGCTGCTC
GCGGGCTCGCTCACGCTCGCGTTCTTCGTCTACGCGTTCGTCAACATCGGGATGGTGAGCGGCGTGCTGCCCGTTGTCGG
CGTGCCGCTGCCGTTCATGAGCTATGGCGGCACGGCGCTCACGACGCTCGGCATCGCCGTCGGGCTCATCATGAGCGTCG
GGCGGCAGAAGCGGCTGATGAAGAGTTGA

Upstream 100 bases:

>100_bases
CCCCGTCGGGAGACCGGAAAAAGTCCCCGCAGGACGACAACCCTGCCGTCTCCGCCGCCAAGCCGGCGGCGGGCGGCATC
GACGAGTAACGGAGACAGGC

Downstream 100 bases:

>100_bases
TCGAAGCGGCGCGATGCGCCGCTTTTTTTGAGTATCGGAGGGGCTGGCCGCCGTTCGCCGGATCGACGCGCCGCCTGCCC
CAAGATCGCGATCTTGCCCG

Product: rod shape-determining protein RodA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 382

Protein sequence:

>382_residues
MQFDKRASLDKIKQMFAGFDRPLALIVFLLLCVGIVTLYSASIDMPGRVEDQLRNIMLTFVLMWVIANIPPQTLMRFAVP
LYSFGVALLVAVALFGMTKKGAKRWLNVGVVIQPSEILKIATPLMLAWYYQRRESSLRWYDFVVAFGILMVPVGLIAKQP
DLGTAVLVFAAGLFVIYLAGLSYKLIVPVLIAGVLAVGSIAVFEERICQPDVVWPLMHDYQKHRVCTLLDPTSDPLGKGF
HTIQAVIAIGSGGPLGKGYLKGTQAHLEFIPEKHTDFIFAVFSEEFGLVGGLVLLTLYMALIARGLYIAAQGATLFGRLL
AGSLTLAFFVYAFVNIGMVSGVLPVVGVPLPFMSYGGTALTTLGIAVGLIMSVGRQKRLMKS

Sequences:

>Translated_382_residues
MQFDKRASLDKIKQMFAGFDRPLALIVFLLLCVGIVTLYSASIDMPGRVEDQLRNIMLTFVLMWVIANIPPQTLMRFAVP
LYSFGVALLVAVALFGMTKKGAKRWLNVGVVIQPSEILKIATPLMLAWYYQRRESSLRWYDFVVAFGILMVPVGLIAKQP
DLGTAVLVFAAGLFVIYLAGLSYKLIVPVLIAGVLAVGSIAVFEERICQPDVVWPLMHDYQKHRVCTLLDPTSDPLGKGF
HTIQAVIAIGSGGPLGKGYLKGTQAHLEFIPEKHTDFIFAVFSEEFGLVGGLVLLTLYMALIARGLYIAAQGATLFGRLL
AGSLTLAFFVYAFVNIGMVSGVLPVVGVPLPFMSYGGTALTTLGIAVGLIMSVGRQKRLMKS
>Mature_382_residues
MQFDKRASLDKIKQMFAGFDRPLALIVFLLLCVGIVTLYSASIDMPGRVEDQLRNIMLTFVLMWVIANIPPQTLMRFAVP
LYSFGVALLVAVALFGMTKKGAKRWLNVGVVIQPSEILKIATPLMLAWYYQRRESSLRWYDFVVAFGILMVPVGLIAKQP
DLGTAVLVFAAGLFVIYLAGLSYKLIVPVLIAGVLAVGSIAVFEERICQPDVVWPLMHDYQKHRVCTLLDPTSDPLGKGF
HTIQAVIAIGSGGPLGKGYLKGTQAHLEFIPEKHTDFIFAVFSEEFGLVGGLVLLTLYMALIARGLYIAAQGATLFGRLL
AGSLTLAFFVYAFVNIGMVSGVLPVVGVPLPFMSYGGTALTTLGIAVGLIMSVGRQKRLMKS

Specific function: This is one of the proteins responsible for the rod shape of the cell. It is required for the expression of the enzymatic activity of PBP2, which is thought to synthesize peptidoglycan in the step of initiation of cell elongation [H]

COG id: COG0772

COG function: function code D; Bacterial cell division membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ftsW/rodA/spoVE family [H]

Homologues:

Organism=Escherichia coli, GI1786853, Length=380, Percent_Identity=49.2105263157895, Blast_Score=293, Evalue=1e-80,
Organism=Escherichia coli, GI1786277, Length=389, Percent_Identity=29.8200514138817, Blast_Score=163, Evalue=2e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001182
- InterPro:   IPR018365
- InterPro:   IPR011923 [H]

Pfam domain/function: PF01098 FTSW_RODA_SPOVE [H]

EC number: NA

Molecular weight: Translated: 41612; Mature: 41612

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: PS00428 FTSW_RODA_SPOVE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFDKRASLDKIKQMFAGFDRPLALIVFLLLCVGIVTLYSASIDMPGRVEDQLRNIMLTF
CCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
VLMWVIANIPPQTLMRFAVPLYSFGVALLVAVALFGMTKKGAKRWLNVGVVIQPSEILKI
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCEEECCHHHHHH
ATPLMLAWYYQRRESSLRWYDFVVAFGILMVPVGLIAKQPDLGTAVLVFAAGLFVIYLAG
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHC
LSYKLIVPVLIAGVLAVGSIAVFEERICQPDVVWPLMHDYQKHRVCTLLDPTSDPLGKGF
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEEEEECCCCCCCCCHH
HTIQAVIAIGSGGPLGKGYLKGTQAHLEFIPEKHTDFIFAVFSEEFGLVGGLVLLTLYMA
HHHHHHHHCCCCCCCCCHHHCCHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHH
LIARGLYIAAQGATLFGRLLAGSLTLAFFVYAFVNIGMVSGVLPVVGVPLPFMSYGGTAL
HHHCCHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHH
TTLGIAVGLIMSVGRQKRLMKS
HHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQFDKRASLDKIKQMFAGFDRPLALIVFLLLCVGIVTLYSASIDMPGRVEDQLRNIMLTF
CCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
VLMWVIANIPPQTLMRFAVPLYSFGVALLVAVALFGMTKKGAKRWLNVGVVIQPSEILKI
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCEEECCHHHHHH
ATPLMLAWYYQRRESSLRWYDFVVAFGILMVPVGLIAKQPDLGTAVLVFAAGLFVIYLAG
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHC
LSYKLIVPVLIAGVLAVGSIAVFEERICQPDVVWPLMHDYQKHRVCTLLDPTSDPLGKGF
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEEEEECCCCCCCCCHH
HTIQAVIAIGSGGPLGKGYLKGTQAHLEFIPEKHTDFIFAVFSEEFGLVGGLVLLTLYMA
HHHHHHHHCCCCCCCCCHHHCCHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHH
LIARGLYIAAQGATLFGRLLAGSLTLAFFVYAFVNIGMVSGVLPVVGVPLPFMSYGGTAL
HHHCCHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHH
TTLGIAVGLIMSVGRQKRLMKS
HHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]