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The map label for this gene is ygiD [H]

Identifier: 83718657

GI number: 83718657

Start: 3371677

End: 3372465

Strand: Direct

Name: ygiD [H]

Synonym: BTH_I2934

Alternate gene names: 83718657

Gene position: 3371677-3372465 (Clockwise)

Preceding gene: 83721432

Following gene: 83720047

Centisome position: 88.51

GC content: 71.74

Gene sequence:

>789_bases
ATGAACCGCCTTCCGTCACTTTATTTATCGCACGGCGCGCCGACGCTGCCGATCGATCCGACGCTGCCGTCCGGCGCATT
CACCGCGCTCGGCGGCGAGCTGCCGCGCCCGCGCGCGGTGCTGATGCTGTCCGCGCACTGGCTCACGCAGCAGCCCGTCG
TCAGCACCGCCGAGCGGCCCGACACGATCCACGATTTCTACGGCTTTCCGCGCGCGCTCTATGAAATCCGCTATCCGGCG
CCCGGCGCGCCCGACGTCGCGGCCCGCGCGGCCGCGCTGCTAGGCGGCGCGGGCATCGAGACCGCGGCCACGCCGCATGG
CCTCGATCACGGCGCGTGGGTGCCGATGCTGCTGATGTTCCCGCACGCCGACGTGCCTGTCGCGCAGTTGTCGATCCAGC
CGCGCGCCGGCGCCGCGCACCACTTTCGCGTCGGCCGCGCGCTGCGGTCGCTGCGCGACGACGGCGTGATGGTGATCGGC
TCGGGCCAGATCACGCACAACCTGCGCGCGGCGGATTTCTCGGCCGCGCCCGAGGACGCGGATCCGCGCGTCGCCGAATT
CACCGGCTGGTTCGAGGAGAAGCTCGCCGCGCGCGACATCGACGCGCTCCTCGACTACCGCCGCCAGGCGCCACATGCGG
CACTGATGCACCCGACCGACGAGCACCTGTTGCCCGTGTTCGCGGCGCTCGGCGCGGCGGACGACGACTACCGGCCGAGA
ATCCAGTCGCTCGGCACGTACCAGCGCGTGCTCGCGATGACGAACTACGTGTTCGACCCGGCCGCCTGA

Upstream 100 bases:

>100_bases
CAACACCAAAGACACAATCAAATCCGTTTTTGGCATTTATCAATGATCGGTGCGAGCCTATAGTCGTAGGCAATATCGTT
TCGCAGAAGTCCCGCTCATC

Downstream 100 bases:

>100_bases
ACGACGCGGCGCGGGAATGTCGGCATCCCCGAGAGGCTACGGGCCAACGGGCCGCGAGGATCGCCCCAAACGACGAAGCC
CGCCCGGGACATCCCGGGCG

Product: class III extradiol-type catecholic dioxygenase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MNRLPSLYLSHGAPTLPIDPTLPSGAFTALGGELPRPRAVLMLSAHWLTQQPVVSTAERPDTIHDFYGFPRALYEIRYPA
PGAPDVAARAAALLGGAGIETAATPHGLDHGAWVPMLLMFPHADVPVAQLSIQPRAGAAHHFRVGRALRSLRDDGVMVIG
SGQITHNLRAADFSAAPEDADPRVAEFTGWFEEKLAARDIDALLDYRRQAPHAALMHPTDEHLLPVFAALGAADDDYRPR
IQSLGTYQRVLAMTNYVFDPAA

Sequences:

>Translated_262_residues
MNRLPSLYLSHGAPTLPIDPTLPSGAFTALGGELPRPRAVLMLSAHWLTQQPVVSTAERPDTIHDFYGFPRALYEIRYPA
PGAPDVAARAAALLGGAGIETAATPHGLDHGAWVPMLLMFPHADVPVAQLSIQPRAGAAHHFRVGRALRSLRDDGVMVIG
SGQITHNLRAADFSAAPEDADPRVAEFTGWFEEKLAARDIDALLDYRRQAPHAALMHPTDEHLLPVFAALGAADDDYRPR
IQSLGTYQRVLAMTNYVFDPAA
>Mature_262_residues
MNRLPSLYLSHGAPTLPIDPTLPSGAFTALGGELPRPRAVLMLSAHWLTQQPVVSTAERPDTIHDFYGFPRALYEIRYPA
PGAPDVAARAAALLGGAGIETAATPHGLDHGAWVPMLLMFPHADVPVAQLSIQPRAGAAHHFRVGRALRSLRDDGVMVIG
SGQITHNLRAADFSAAPEDADPRVAEFTGWFEEKLAARDIDALLDYRRQAPHAALMHPTDEHLLPVFAALGAADDDYRPR
IQSLGTYQRVLAMTNYVFDPAA

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=236, Percent_Identity=38.9830508474576, Blast_Score=172, Evalue=2e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 28327; Mature: 28327

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRLPSLYLSHGAPTLPIDPTLPSGAFTALGGELPRPRAVLMLSAHWLTQQPVVSTAERP
CCCCCCCHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCEEEEEEHHHHCCCCHHHHCCCC
DTIHDFYGFPRALYEIRYPAPGAPDVAARAAALLGGAGIETAATPHGLDHGAWVPMLLMF
CHHHHHHCCHHHHHEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHC
PHADVPVAQLSIQPRAGAAHHFRVGRALRSLRDDGVMVIGSGQITHNLRAADFSAAPEDA
CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCEECCCCCCCCCCCCCCC
DPRVAEFTGWFEEKLAARDIDALLDYRRQAPHAALMHPTDEHLLPVFAALGAADDDYRPR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHCCCCCCCHHH
IQSLGTYQRVLAMTNYVFDPAA
HHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNRLPSLYLSHGAPTLPIDPTLPSGAFTALGGELPRPRAVLMLSAHWLTQQPVVSTAERP
CCCCCCCHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCEEEEEEHHHHCCCCHHHHCCCC
DTIHDFYGFPRALYEIRYPAPGAPDVAARAAALLGGAGIETAATPHGLDHGAWVPMLLMF
CHHHHHHCCHHHHHEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHC
PHADVPVAQLSIQPRAGAAHHFRVGRALRSLRDDGVMVIGSGQITHNLRAADFSAAPEDA
CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCEECCCCCCCCCCCCCCC
DPRVAEFTGWFEEKLAARDIDALLDYRRQAPHAALMHPTDEHLLPVFAALGAADDDYRPR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHCCCCCCCHHH
IQSLGTYQRVLAMTNYVFDPAA
HHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]