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The map label for this gene is yfdE [H]

Identifier: 83718526

GI number: 83718526

Start: 70850

End: 71983

Strand: Direct

Name: yfdE [H]

Synonym: BTH_I0064

Alternate gene names: 83718526

Gene position: 70850-71983 (Clockwise)

Preceding gene: 83719271

Following gene: 83719382

Centisome position: 1.86

GC content: 72.13

Gene sequence:

>1134_bases
ATGGGCCCTTTGCACGGAATCCGAATCGTCGAAATCGCCGGAATCGGCCCCGCGCCGTTCTGCGGGATGCTGCTCGCCGA
CATGGGCGCGGACGTGATCCTCGTCGAACGCACGGCCGGTCGCGCAGGCGATCCGCTCGACCTCGGCCGCCGCGCGATCT
TCAATCGCGGCAAGCGCTCGCTCGCGCTCGACCTGAAGCAGCCGGAGGCGGTGGACGCGGTGCTGCGGCTCGTCGAGCAT
GCCGACGCGCTGATCGAAGGCATGCGCCCGGGCGTGATGGAGCGGCTCGGGCTCGGCCCCGATGCGTGTTTCGCGCGCAA
TCCGAAACTCGTCTACGGGCGGATGACGGGCTGGGGGCAGGACGGCCCGCTCGCGCACGCGGCGGGGCACGACATCAACT
ACATCGGGCTGTCCGGCGCACTGTGGTACGCGGGGCAGCCGGGCGACGCGCCGTTCGCGCCGCCGACGCTCGTCGGCGAT
CTCGGCGGCGGCGCGCTGTATCTCGCGATGGGCGTGCTCGCGGGCATCGTCGATGCGCGCCTGCGCGGCAAGGGGCAAGT
CGTCGATGCGGCGATCGTCGACGGCAGCGCGAACCTGATGAACCTGCTGCTGTCGATTCACGCGGCGGGCTTCATGCCGA
TGGCGCGCGGCCAGGGGCTGCTCGACGGCCCGCACTGGTACGGCAGCTATCGCTGCGCGTGCGGCGGCTACGTCAGCGTC
GGCGCGCTCGAGCCGCCGTTCTACGCGCTGCTCGTCGACAAGCTCGGCCTCGCCGACGACGACGATTTCCGGAACCCGTA
CGACGCGAGCCGCTGGCCCCGGCTGCGCGAGCGGCTCGCGGAGATTTTCGCGAGCCGGCCGCGCGCGCATTGGGTCGAGC
TGATGGAGGGCACCGACGTCTGTTTCGCGCCGGTGCTGAGTCCGGCCGAAGCGAAGTCGCATCCGCATCTGGCGGCGCGC
GGCGTTTATGCGGAGCGCGACGGCGTGCTGCAGGCGGCGCCGGCGCCGCGGTTTTCCGGCTCGCCGAACGCGCAGCCCGG
CGCGGTGCCGAAGCGCGGCGCGGACAGCGCGGCGATCCTGCGCGAAGCGGGGTTCGCGCCAGACGAGATCGCGGCGCTCG
TCGCGAAAGCGTGA

Upstream 100 bases:

>100_bases
GTGACGCTGCCCGACATCGCCGGGCCGCGATCGTCGCGGCCGCGCGGCGCGACTCGGCATCGCGCCGAACCGAACGCATC
GAACCTCACGGGAGCGGGCA

Downstream 100 bases:

>100_bases
GCGGCCGGGCGCGCGAAGCCGCCTCGCCCGATCGATCCGCCGCGCTCGGCGCGTTGCGTCACGGCGCCCGCCCGCTCATT
TCCCGCCGACGGTCGGCAGC

Product: alpha-methylacyl-CoA racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 377; Mature: 376

Protein sequence:

>377_residues
MGPLHGIRIVEIAGIGPAPFCGMLLADMGADVILVERTAGRAGDPLDLGRRAIFNRGKRSLALDLKQPEAVDAVLRLVEH
ADALIEGMRPGVMERLGLGPDACFARNPKLVYGRMTGWGQDGPLAHAAGHDINYIGLSGALWYAGQPGDAPFAPPTLVGD
LGGGALYLAMGVLAGIVDARLRGKGQVVDAAIVDGSANLMNLLLSIHAAGFMPMARGQGLLDGPHWYGSYRCACGGYVSV
GALEPPFYALLVDKLGLADDDDFRNPYDASRWPRLRERLAEIFASRPRAHWVELMEGTDVCFAPVLSPAEAKSHPHLAAR
GVYAERDGVLQAAPAPRFSGSPNAQPGAVPKRGADSAAILREAGFAPDEIAALVAKA

Sequences:

>Translated_377_residues
MGPLHGIRIVEIAGIGPAPFCGMLLADMGADVILVERTAGRAGDPLDLGRRAIFNRGKRSLALDLKQPEAVDAVLRLVEH
ADALIEGMRPGVMERLGLGPDACFARNPKLVYGRMTGWGQDGPLAHAAGHDINYIGLSGALWYAGQPGDAPFAPPTLVGD
LGGGALYLAMGVLAGIVDARLRGKGQVVDAAIVDGSANLMNLLLSIHAAGFMPMARGQGLLDGPHWYGSYRCACGGYVSV
GALEPPFYALLVDKLGLADDDDFRNPYDASRWPRLRERLAEIFASRPRAHWVELMEGTDVCFAPVLSPAEAKSHPHLAAR
GVYAERDGVLQAAPAPRFSGSPNAQPGAVPKRGADSAAILREAGFAPDEIAALVAKA
>Mature_376_residues
GPLHGIRIVEIAGIGPAPFCGMLLADMGADVILVERTAGRAGDPLDLGRRAIFNRGKRSLALDLKQPEAVDAVLRLVEHA
DALIEGMRPGVMERLGLGPDACFARNPKLVYGRMTGWGQDGPLAHAAGHDINYIGLSGALWYAGQPGDAPFAPPTLVGDL
GGGALYLAMGVLAGIVDARLRGKGQVVDAAIVDGSANLMNLLLSIHAAGFMPMARGQGLLDGPHWYGSYRCACGGYVSVG
ALEPPFYALLVDKLGLADDDDFRNPYDASRWPRLRERLAEIFASRPRAHWVELMEGTDVCFAPVLSPAEAKSHPHLAARG
VYAERDGVLQAAPAPRFSGSPNAQPGAVPKRGADSAAILREAGFAPDEIAALVAKA

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI266456254, Length=374, Percent_Identity=40.9090909090909, Blast_Score=283, Evalue=1e-76,
Organism=Homo sapiens, GI42794625, Length=374, Percent_Identity=40.9090909090909, Blast_Score=283, Evalue=1e-76,
Organism=Homo sapiens, GI266458393, Length=254, Percent_Identity=45.2755905511811, Blast_Score=219, Evalue=3e-57,
Organism=Homo sapiens, GI266458397, Length=251, Percent_Identity=45.0199203187251, Blast_Score=216, Evalue=2e-56,
Organism=Homo sapiens, GI42822893, Length=136, Percent_Identity=49.2647058823529, Blast_Score=132, Evalue=4e-31,
Organism=Homo sapiens, GI266458395, Length=136, Percent_Identity=49.2647058823529, Blast_Score=132, Evalue=4e-31,
Organism=Homo sapiens, GI300863128, Length=380, Percent_Identity=25.5263157894737, Blast_Score=126, Evalue=3e-29,
Organism=Homo sapiens, GI300863124, Length=333, Percent_Identity=26.4264264264264, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI300863126, Length=380, Percent_Identity=23.6842105263158, Blast_Score=96, Evalue=6e-20,
Organism=Homo sapiens, GI13376042, Length=333, Percent_Identity=24.024024024024, Blast_Score=92, Evalue=9e-19,
Organism=Escherichia coli, GI87082093, Length=370, Percent_Identity=27.8378378378378, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1786222, Length=400, Percent_Identity=26.75, Blast_Score=101, Evalue=9e-23,
Organism=Escherichia coli, GI1788717, Length=210, Percent_Identity=28.0952380952381, Blast_Score=83, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI115535051, Length=340, Percent_Identity=32.6470588235294, Blast_Score=192, Evalue=3e-49,
Organism=Caenorhabditis elegans, GI32564160, Length=338, Percent_Identity=33.7278106508876, Blast_Score=189, Evalue=3e-48,
Organism=Drosophila melanogaster, GI24585488, Length=375, Percent_Identity=38.9333333333333, Blast_Score=253, Evalue=2e-67,
Organism=Drosophila melanogaster, GI24648431, Length=395, Percent_Identity=30.126582278481, Blast_Score=132, Evalue=4e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 39644; Mature: 39513

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGPLHGIRIVEIAGIGPAPFCGMLLADMGADVILVERTAGRAGDPLDLGRRAIFNRGKRS
CCCCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCE
LALDLKQPEAVDAVLRLVEHADALIEGMRPGVMERLGLGPDACFARNPKLVYGRMTGWGQ
EEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHCCCCCEEEEECCCCCC
DGPLAHAAGHDINYIGLSGALWYAGQPGDAPFAPPTLVGDLGGGALYLAMGVLAGIVDAR
CCCCCCCCCCCCEEEECCCEEEECCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHH
LRGKGQVVDAAIVDGSANLMNLLLSIHAAGFMPMARGQGLLDGPHWYGSYRCACGGYVSV
HCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCEEECCCCEEEC
GALEPPFYALLVDKLGLADDDDFRNPYDASRWPRLRERLAEIFASRPRAHWVELMEGTDV
CCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCE
CFAPVLSPAEAKSHPHLAARGVYAERDGVLQAAPAPRFSGSPNAQPGAVPKRGADSAAIL
EHHHCCCCHHHCCCCCHHHCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHHH
REAGFAPDEIAALVAKA
HHCCCCHHHHHHHHHCC
>Mature Secondary Structure 
GPLHGIRIVEIAGIGPAPFCGMLLADMGADVILVERTAGRAGDPLDLGRRAIFNRGKRS
CCCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCE
LALDLKQPEAVDAVLRLVEHADALIEGMRPGVMERLGLGPDACFARNPKLVYGRMTGWGQ
EEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHCCCCCEEEEECCCCCC
DGPLAHAAGHDINYIGLSGALWYAGQPGDAPFAPPTLVGDLGGGALYLAMGVLAGIVDAR
CCCCCCCCCCCCEEEECCCEEEECCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHH
LRGKGQVVDAAIVDGSANLMNLLLSIHAAGFMPMARGQGLLDGPHWYGSYRCACGGYVSV
HCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCEEECCCCEEEC
GALEPPFYALLVDKLGLADDDDFRNPYDASRWPRLRERLAEIFASRPRAHWVELMEGTDV
CCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCE
CFAPVLSPAEAKSHPHLAARGVYAERDGVLQAAPAPRFSGSPNAQPGAVPKRGADSAAIL
EHHHCCCCHHHCCCCCHHHCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHHH
REAGFAPDEIAALVAKA
HHCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]