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The map label for this gene is yafC [H]

Identifier: 83718504

GI number: 83718504

Start: 2965148

End: 2966815

Strand: Reverse

Name: yafC [H]

Synonym: BTH_I2603

Alternate gene names: 83718504

Gene position: 2966815-2965148 (Counterclockwise)

Preceding gene: 83721475

Following gene: 83719277

Centisome position: 77.89

GC content: 70.2

Gene sequence:

>1668_bases
ATGTTCGTTCCTCCGTCATGCGGCGACGCCGAGCTGGCGCAGCAGCGTCAGGTTGTCTTCGATGTGCCAGTTCTCGGCGA
TGCGGCCGTGCTCGATGCGATAGATGTCGGTTGCGATGAAGTCGATCGCCTGGCCTTTGCCTTGCGTGCGCCCGAACGTG
CCCGTGAAGTGGCCGCGAAAGCGCAGATGCACGACGACGCGATCGCCCGCGACGATCATCTGTTCGATCGCGCACGACAG
ATCAGGGATTGCTTCACGCATCGTCCGCGACGCGGCGAGCGGGCCGGCGAGGCCAGGCGCGCGGCCGGGCGGCGGCGTGC
GGTCGGTGAAATCGTCGGCGAGCGCGGCGCGCGCGAGCGCCGGATCGCCGTTGTGCCAGAACGTGTCGTAGCGGCGCGCG
GCGAGAATCTGCGCATCGCGCTGCGCCGGAGGCAGGCTGCCGTCGACGCTCAGGTGCGCGGGTTCGATCAGGCCGGCCGT
ATCGGCGCGGGCGGCGGGCGCGAGCGCCGCAGCGAGCAGCAGCGCGGCCGCGGCGCACGCCGCGGGGAGCGAGCGTCGGC
GAAGGGTGTCGGGCATGAGGATCTCCGTGAGTTCGTTGCGTGGCGCGCGATGCGGGAAGGCGGTCGCGCGGATGTCGTTC
GTTTCGTTCGTACGGCGTCGGCATTCATGTTAGTTTTCCGATTTCGATGTAAATACGGGCTTGGAGCGAATGAATTATTC
GAAAAATGGAAAGAGTGGACGGAGCCTTCGGCGGGGGCGCCGATGCTGATCGACGATTTGCCGGCGCTGGCGACGTTCGC
GCGGATCGTCGCGGCGGGCAGCCTGTCGGGCGCGGCGCGCGAGCTTGATCTGTCCCTGTCGGTCGTCAGCAAGCGGCTCG
CGCAACTCGAGGCGCGACTGGGCGTGCGTCTGTTGCAGCGGACGACGCGCCAGCAGACGCTGACCGACGAGGGGGCGCTG
TTCCATGCGCAAGTGGTGAGGATCCTCGCGGAGATCGAGCAGGCGGAATCGCTGATGCGCGAGCGGCGCGGCAGCGTGAG
CGGCGTGCTGCGGATCACGGCGCCCGGGGAGCTCGGACGGCTGCGGATCGCGCCCATCGTCGCCGCGTTTCGGCGGCAGT
ATCCGCAGGTGACGGTCCAGATGCAGCTCACCGACGCCGTTGTCGACCTGATCGCGCACGACGTCGACGTCGCGGTGCGC
ATCGGCATGCTCGCGGATTCGTCGCTGATCGCGCGCGAGCTCGCGCCGAACTATCGCGTGCTGTGCGCGTCGCCCGCGTA
TCTCGCCGAGCACGGCGCGCCCGAGCGGCCGGCCGACCTGCTCGCGCATCGCTGCATCGTGATGGGCGAGCAGCCGCGCG
TCGAATGGCGCTTCGACGGGCCGCAGCCCGTGGCGGTCGAGGTATCGGCCGCGCTCCTGACGAACGACGGCGGCGCGGCC
CGCGCGCTCGCGCTCGAAGGCGCGGGCATCGCGCTGAAGTCGATCTGGGACGTGGGGCCGGACATCGCCGCGGGGCGGCT
GCGGCGTGTGCTGCCCGAATGCGCGTCGAGCGCCGCGCCGCTGCACGCGGTATATCCGAGCGGGCGGCACCTCGCGCTGC
GCGTGCGGACGTTCGTCGACTATCTCGGCGTCGAGCTGCGCCGCGCGTGGTGCTGGGACGAGCGATGA

Upstream 100 bases:

>100_bases
GGCGAGGCCGAGGCCGCCGCCCGCGCGGGCAAGGAAATCGCGCCGCTCCGGCGCGGACGGAGCGGCCGTTGCGCCGTTCG
TGTCGAACGTGTTCGTCGTC

Downstream 100 bases:

>100_bases
GCGGCTTGCGGCCGGCGCGCGGCCGCAGGGGCGGGCGATCGGGCGAGCGCCGGTCAGACGGCCGTATTCGCGTCCGCCGC
CATTTCTCCATGCAGGCGTC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 555; Mature: 555

Protein sequence:

>555_residues
MFVPPSCGDAELAQQRQVVFDVPVLGDAAVLDAIDVGCDEVDRLAFALRAPERAREVAAKAQMHDDAIARDDHLFDRARQ
IRDCFTHRPRRGERAGEARRAAGRRRAVGEIVGERGARERRIAVVPERVVAARGENLRIALRRRQAAVDAQVRGFDQAGR
IGAGGGRERRSEQQRGRGARRGERASAKGVGHEDLREFVAWRAMREGGRADVVRFVRTASAFMLVFRFRCKYGLGANELF
EKWKEWTEPSAGAPMLIDDLPALATFARIVAAGSLSGAARELDLSLSVVSKRLAQLEARLGVRLLQRTTRQQTLTDEGAL
FHAQVVRILAEIEQAESLMRERRGSVSGVLRITAPGELGRLRIAPIVAAFRRQYPQVTVQMQLTDAVVDLIAHDVDVAVR
IGMLADSSLIARELAPNYRVLCASPAYLAEHGAPERPADLLAHRCIVMGEQPRVEWRFDGPQPVAVEVSAALLTNDGGAA
RALALEGAGIALKSIWDVGPDIAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGVELRRAWCWDER

Sequences:

>Translated_555_residues
MFVPPSCGDAELAQQRQVVFDVPVLGDAAVLDAIDVGCDEVDRLAFALRAPERAREVAAKAQMHDDAIARDDHLFDRARQ
IRDCFTHRPRRGERAGEARRAAGRRRAVGEIVGERGARERRIAVVPERVVAARGENLRIALRRRQAAVDAQVRGFDQAGR
IGAGGGRERRSEQQRGRGARRGERASAKGVGHEDLREFVAWRAMREGGRADVVRFVRTASAFMLVFRFRCKYGLGANELF
EKWKEWTEPSAGAPMLIDDLPALATFARIVAAGSLSGAARELDLSLSVVSKRLAQLEARLGVRLLQRTTRQQTLTDEGAL
FHAQVVRILAEIEQAESLMRERRGSVSGVLRITAPGELGRLRIAPIVAAFRRQYPQVTVQMQLTDAVVDLIAHDVDVAVR
IGMLADSSLIARELAPNYRVLCASPAYLAEHGAPERPADLLAHRCIVMGEQPRVEWRFDGPQPVAVEVSAALLTNDGGAA
RALALEGAGIALKSIWDVGPDIAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGVELRRAWCWDER
>Mature_555_residues
MFVPPSCGDAELAQQRQVVFDVPVLGDAAVLDAIDVGCDEVDRLAFALRAPERAREVAAKAQMHDDAIARDDHLFDRARQ
IRDCFTHRPRRGERAGEARRAAGRRRAVGEIVGERGARERRIAVVPERVVAARGENLRIALRRRQAAVDAQVRGFDQAGR
IGAGGGRERRSEQQRGRGARRGERASAKGVGHEDLREFVAWRAMREGGRADVVRFVRTASAFMLVFRFRCKYGLGANELF
EKWKEWTEPSAGAPMLIDDLPALATFARIVAAGSLSGAARELDLSLSVVSKRLAQLEARLGVRLLQRTTRQQTLTDEGAL
FHAQVVRILAEIEQAESLMRERRGSVSGVLRITAPGELGRLRIAPIVAAFRRQYPQVTVQMQLTDAVVDLIAHDVDVAVR
IGMLADSSLIARELAPNYRVLCASPAYLAEHGAPERPADLLAHRCIVMGEQPRVEWRFDGPQPVAVEVSAALLTNDGGAA
RALALEGAGIALKSIWDVGPDIAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGVELRRAWCWDER

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=296, Percent_Identity=38.8513513513513, Blast_Score=179, Evalue=5e-46,
Organism=Escherichia coli, GI87081978, Length=292, Percent_Identity=38.6986301369863, Blast_Score=174, Evalue=1e-44,
Organism=Escherichia coli, GI1789440, Length=292, Percent_Identity=33.5616438356164, Blast_Score=158, Evalue=1e-39,
Organism=Escherichia coli, GI1789639, Length=288, Percent_Identity=31.25, Blast_Score=151, Evalue=8e-38,
Organism=Escherichia coli, GI1787128, Length=289, Percent_Identity=28.719723183391, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI145693193, Length=297, Percent_Identity=30.3030303030303, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI1787589, Length=292, Percent_Identity=26.3698630136986, Blast_Score=97, Evalue=4e-21,
Organism=Escherichia coli, GI1789173, Length=250, Percent_Identity=26.8, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI1787601, Length=138, Percent_Identity=29.7101449275362, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1788481, Length=287, Percent_Identity=24.7386759581882, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1786448, Length=288, Percent_Identity=28.125, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI1788297, Length=141, Percent_Identity=32.6241134751773, Blast_Score=66, Evalue=6e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 61027; Mature: 61027

Theoretical pI: Translated: 10.21; Mature: 10.21

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVPPSCGDAELAQQRQVVFDVPVLGDAAVLDAIDVGCDEVDRLAFALRAPERAREVAAK
CCCCCCCCCHHHHHCCCEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHH
AQMHDDAIARDDHLFDRARQIRDCFTHRPRRGERAGEARRAAGRRRAVGEIVGERGARER
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
RIAVVPERVVAARGENLRIALRRRQAAVDAQVRGFDQAGRIGAGGGRERRSEQQRGRGAR
EEEECCHHHHHHCCCCEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCC
RGERASAKGVGHEDLREFVAWRAMREGGRADVVRFVRTASAFMLVFRFRCKYGLGANELF
CCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
EKWKEWTEPSAGAPMLIDDLPALATFARIVAAGSLSGAARELDLSLSVVSKRLAQLEARL
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
GVRLLQRTTRQQTLTDEGALFHAQVVRILAEIEQAESLMRERRGSVSGVLRITAPGELGR
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCC
LRIAPIVAAFRRQYPQVTVQMQLTDAVVDLIAHDVDVAVRIGMLADSSLIARELAPNYRV
CHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHCHHHHHEECHHCCHHHHHHHHCCCCEE
LCASPAYLAEHGAPERPADLLAHRCIVMGEQPRVEWRFDGPQPVAVEVSAALLTNDGGAA
EECCCHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEEEEEEECCCCCE
RALALEGAGIALKSIWDVGPDIAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVD
EEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEHHHHHHHH
YLGVELRRAWCWDER
HHHHHHHHHHCCCCC
>Mature Secondary Structure
MFVPPSCGDAELAQQRQVVFDVPVLGDAAVLDAIDVGCDEVDRLAFALRAPERAREVAAK
CCCCCCCCCHHHHHCCCEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHH
AQMHDDAIARDDHLFDRARQIRDCFTHRPRRGERAGEARRAAGRRRAVGEIVGERGARER
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
RIAVVPERVVAARGENLRIALRRRQAAVDAQVRGFDQAGRIGAGGGRERRSEQQRGRGAR
EEEECCHHHHHHCCCCEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCC
RGERASAKGVGHEDLREFVAWRAMREGGRADVVRFVRTASAFMLVFRFRCKYGLGANELF
CCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
EKWKEWTEPSAGAPMLIDDLPALATFARIVAAGSLSGAARELDLSLSVVSKRLAQLEARL
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
GVRLLQRTTRQQTLTDEGALFHAQVVRILAEIEQAESLMRERRGSVSGVLRITAPGELGR
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCC
LRIAPIVAAFRRQYPQVTVQMQLTDAVVDLIAHDVDVAVRIGMLADSSLIARELAPNYRV
CHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHCHHHHHEECHHCCHHHHHHHHCCCCEE
LCASPAYLAEHGAPERPADLLAHRCIVMGEQPRVEWRFDGPQPVAVEVSAALLTNDGGAA
EECCCHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEEEEEEECCCCCE
RALALEGAGIALKSIWDVGPDIAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVD
EEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEHHHHHHHH
YLGVELRRAWCWDER
HHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]