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The map label for this gene is yafC [H]

Identifier: 83718457

GI number: 83718457

Start: 3735642

End: 3736112

Strand: Direct

Name: yafC [H]

Synonym: BTH_I3280

Alternate gene names: 83718457

Gene position: 3735642-3736112 (Clockwise)

Preceding gene: 83721635

Following gene: 83719108

Centisome position: 98.07

GC content: 68.58

Gene sequence:

>471_bases
GTGATCCGCAGCGGCACGCTCAGCGATTCGAGCCTGATGTCGCGCCGCCTCGGGCCGTTCAGCTTTCTGCTGTGCGCGTC
GCCCGCGTATCTCGCGCGGGCGGGCGCTCCGCGCACGCTGCGCGAACTCGACGCGCACGCGTGCGTGCGCTACCGCTTCC
CGACGACGGGCAAGCTGCAGCCGTGGGCGCTGCTGCCAGACGGCAGCGAGCCGCCGAACCTGCACACCACGATGACGTGC
AACAACATGGAGGCGCTGCGCGCGGCGGTGATGGCGGGATTCGGCATCGGCTACATGCCGGACTTCCTCGCGCGCGACAC
GCTCGCCGACGGCGCGCTCGTGACCGTGCTCGACGCATACCGGATCGGGCCCGGGCAGTTCTCGATTTTGTGGCCGTCGA
ACCGGCAGTTGTCGCCGAAGGTGCGAGTGTTCGTCGATTTCGTTTGCGAGCGCTTGTTTCGCGACGCATGA

Upstream 100 bases:

>100_bases
CGGATAGGCTCCGGAATTCAAGCGCCGCTATCCGGACGTCGAGCTGGACCTCGATTTCAACGACCGGCTCGTCGACGTCG
TCGAAGGCGGCTTCGACGCG

Downstream 100 bases:

>100_bases
ATGCCGGAGCCGCAGCGGAGTCAGTCGCCGGTCTGGAGCGCCTGCTCGGCGCGCGCTCGCCGCGGCGAACGGCGCGAACC
ACATCTCGATCGTCGTGCCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 156

Protein sequence:

>156_residues
MIRSGTLSDSSLMSRRLGPFSFLLCASPAYLARAGAPRTLRELDAHACVRYRFPTTGKLQPWALLPDGSEPPNLHTTMTC
NNMEALRAAVMAGFGIGYMPDFLARDTLADGALVTVLDAYRIGPGQFSILWPSNRQLSPKVRVFVDFVCERLFRDA

Sequences:

>Translated_156_residues
MIRSGTLSDSSLMSRRLGPFSFLLCASPAYLARAGAPRTLRELDAHACVRYRFPTTGKLQPWALLPDGSEPPNLHTTMTC
NNMEALRAAVMAGFGIGYMPDFLARDTLADGALVTVLDAYRIGPGQFSILWPSNRQLSPKVRVFVDFVCERLFRDA
>Mature_156_residues
MIRSGTLSDSSLMSRRLGPFSFLLCASPAYLARAGAPRTLRELDAHACVRYRFPTTGKLQPWALLPDGSEPPNLHTTMTC
NNMEALRAAVMAGFGIGYMPDFLARDTLADGALVTVLDAYRIGPGQFSILWPSNRQLSPKVRVFVDFVCERLFRDA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=153, Percent_Identity=31.3725490196078, Blast_Score=84, Evalue=5e-18,
Organism=Escherichia coli, GI145693193, Length=157, Percent_Identity=33.1210191082803, Blast_Score=82, Evalue=1e-17,
Organism=Escherichia coli, GI1787128, Length=148, Percent_Identity=28.3783783783784, Blast_Score=65, Evalue=2e-12,
Organism=Escherichia coli, GI1789639, Length=168, Percent_Identity=28.5714285714286, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 17212; Mature: 17212

Theoretical pI: Translated: 8.97; Mature: 8.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRSGTLSDSSLMSRRLGPFSFLLCASPAYLARAGAPRTLRELDAHACVRYRFPTTGKLQ
CCCCCCCCHHHHHHHCCCCCEEHHHCCHHHHHHCCCCHHHHHHHHHHEEEEECCCCCCCC
PWALLPDGSEPPNLHTTMTCNNMEALRAAVMAGFGIGYMPDFLARDTLADGALVTVLDAY
CEEECCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHEEHHHHH
RIGPGQFSILWPSNRQLSPKVRVFVDFVCERLFRDA
CCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIRSGTLSDSSLMSRRLGPFSFLLCASPAYLARAGAPRTLRELDAHACVRYRFPTTGKLQ
CCCCCCCCHHHHHHHCCCCCEEHHHCCHHHHHHCCCCHHHHHHHHHHEEEEECCCCCCCC
PWALLPDGSEPPNLHTTMTCNNMEALRAAVMAGFGIGYMPDFLARDTLADGALVTVLDAY
CEEECCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHEEHHHHH
RIGPGQFSILWPSNRQLSPKVRVFVDFVCERLFRDA
CCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]