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The map label for this gene is ycaN [H]

Identifier: 83718422

GI number: 83718422

Start: 2716776

End: 2717696

Strand: Direct

Name: ycaN [H]

Synonym: BTH_I2389

Alternate gene names: 83718422

Gene position: 2716776-2717696 (Clockwise)

Preceding gene: 83720629

Following gene: 83719580

Centisome position: 71.32

GC content: 70.79

Gene sequence:

>921_bases
ATGACTCTGCGACGCGATCCGCTCGGCGGCCTCCATGTGTTCGTGAGCGTCGTCACGCACGGCAATTTCACGCGCGCGGC
CGCGGCGCTCGGTCTCACGCCCGCGGCGGTGAGCCTTGCGATCGGCCAGCTCGAAAGCGAGCTGAAAGTGAAGCTGTTCA
GCCGCAGCACGCGCGGCGTGAGCCTGACGGAAGCCGGCCAGCGCTATTACGACGCGACCGCGCAGCCGTACCGGCAGGTC
GTCGACGCGCGCGACGCGCTGAACGACGCGCGCGACGAACCCGAGGGCCTGCTGCGGATCAGCGCGCTGCATCTCGCGAA
ATCCGTCGTGACGGCCGACGTGCTCGCCGAATTCTTCCGACGCTACCCGAAGGTGAGCGTCGAGATCCGCTACGAGGATC
ATCTCGTCGACATCGTCAAGGAGCGCCTCGACGCGGGGATACGCCTCGCCGACCGGCTGCAGCCCGGGATGGTCGGCGTG
AAGATCGCGCCCGCGCTCACGTGCGCGCTCGTCGCGACGCCCGGCTACCTCGCGCAGCACGGCACGCCGGCGAAGGTCGC
CGATCTCGCGCGGCACATGTGCATCCGCTTTCGCTTCCCGAAAAGCGGCCGCCTGCACAAGTGGCCGCTGCGCGACGGCC
GCCGCGACGTCGATCTCGACGTCGCCGGGCGCTTCGTCAGCACGGATACGGGCGCGGTGATCGACGCCGCGCGCGCGGGC
GCGGGCATCGCGTTCGTGTTCATGCGCGAGCGGATCGAGGACGACCTGCGCCGCGGCACGCTGCGCGAGGTGCTGCCGGG
CGCATGCAGGACGCTGCCGCCGATGTGGCTCTACTACGCGAACCGCAAGCACGTGCCGCCGAAGCTGCGCGCGTTCATCG
CGGTGCTGCGCGAGCATGCGGCGGCGGACGGGCGGCGCTGA

Upstream 100 bases:

>100_bases
CATCGGCGGCTCCTTGTGCGGTTCGACTGCGAGCCAGTGTAGGGATCGCCGGTATCTGAGAGAATCGGCATTCCGCTCAC
AAACGTATCAAGTTTTTCTA

Downstream 100 bases:

>100_bases
AGGCCGGCCCGCACCGTCGCGGCGCCATTGCGTGTCGCGCTTCGTTCGCGCCCGGACGCGACGCTGCGCGACGCGATTCG
CCGCCGCTGACGATGGCGTT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 305

Protein sequence:

>306_residues
MTLRRDPLGGLHVFVSVVTHGNFTRAAAALGLTPAAVSLAIGQLESELKVKLFSRSTRGVSLTEAGQRYYDATAQPYRQV
VDARDALNDARDEPEGLLRISALHLAKSVVTADVLAEFFRRYPKVSVEIRYEDHLVDIVKERLDAGIRLADRLQPGMVGV
KIAPALTCALVATPGYLAQHGTPAKVADLARHMCIRFRFPKSGRLHKWPLRDGRRDVDLDVAGRFVSTDTGAVIDAARAG
AGIAFVFMRERIEDDLRRGTLREVLPGACRTLPPMWLYYANRKHVPPKLRAFIAVLREHAAADGRR

Sequences:

>Translated_306_residues
MTLRRDPLGGLHVFVSVVTHGNFTRAAAALGLTPAAVSLAIGQLESELKVKLFSRSTRGVSLTEAGQRYYDATAQPYRQV
VDARDALNDARDEPEGLLRISALHLAKSVVTADVLAEFFRRYPKVSVEIRYEDHLVDIVKERLDAGIRLADRLQPGMVGV
KIAPALTCALVATPGYLAQHGTPAKVADLARHMCIRFRFPKSGRLHKWPLRDGRRDVDLDVAGRFVSTDTGAVIDAARAG
AGIAFVFMRERIEDDLRRGTLREVLPGACRTLPPMWLYYANRKHVPPKLRAFIAVLREHAAADGRR
>Mature_305_residues
TLRRDPLGGLHVFVSVVTHGNFTRAAAALGLTPAAVSLAIGQLESELKVKLFSRSTRGVSLTEAGQRYYDATAQPYRQVV
DARDALNDARDEPEGLLRISALHLAKSVVTADVLAEFFRRYPKVSVEIRYEDHLVDIVKERLDAGIRLADRLQPGMVGVK
IAPALTCALVATPGYLAQHGTPAKVADLARHMCIRFRFPKSGRLHKWPLRDGRRDVDLDVAGRFVSTDTGAVIDAARAGA
GIAFVFMRERIEDDLRRGTLREVLPGACRTLPPMWLYYANRKHVPPKLRAFIAVLREHAAADGRR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=302, Percent_Identity=34.4370860927152, Blast_Score=185, Evalue=4e-48,
Organism=Escherichia coli, GI1787589, Length=299, Percent_Identity=29.4314381270903, Blast_Score=157, Evalue=7e-40,
Organism=Escherichia coli, GI1786401, Length=302, Percent_Identity=31.4569536423841, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI87081978, Length=295, Percent_Identity=31.864406779661, Blast_Score=127, Evalue=9e-31,
Organism=Escherichia coli, GI1789639, Length=295, Percent_Identity=30.1694915254237, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1789440, Length=292, Percent_Identity=31.1643835616438, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI145693193, Length=296, Percent_Identity=27.3648648648649, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI157672245, Length=173, Percent_Identity=30.635838150289, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788706, Length=303, Percent_Identity=26.7326732673267, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1789173, Length=195, Percent_Identity=32.3076923076923, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787806, Length=122, Percent_Identity=35.2459016393443, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33820; Mature: 33688

Theoretical pI: Translated: 10.43; Mature: 10.43

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLRRDPLGGLHVFVSVVTHGNFTRAAAALGLTPAAVSLAIGQLESELKVKLFSRSTRGV
CCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
SLTEAGQRYYDATAQPYRQVVDARDALNDARDEPEGLLRISALHLAKSVVTADVLAEFFR
CHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RYPKVSVEIRYEDHLVDIVKERLDAGIRLADRLQPGMVGVKIAPALTCALVATPGYLAQH
HCCCEEEEEEEHHHHHHHHHHHHHCCCEEHHHCCCCCEEEEHHHHHHHHHHCCCCHHHCC
GTPAKVADLARHMCIRFRFPKSGRLHKWPLRDGRRDVDLDVAGRFVSTDTGAVIDAARAG
CCCHHHHHHHHHHHHEEECCCCCCEEECCCCCCCCCCCHHHCCEEECCCCCHHHHHHHCC
AGIAFVFMRERIEDDLRRGTLREVLPGACRTLPPMWLYYANRKHVPPKLRAFIAVLREHA
CCCHHHHHHHHHHHHHHHCHHHHHCCHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHH
AADGRR
HCCCCC
>Mature Secondary Structure 
TLRRDPLGGLHVFVSVVTHGNFTRAAAALGLTPAAVSLAIGQLESELKVKLFSRSTRGV
CCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
SLTEAGQRYYDATAQPYRQVVDARDALNDARDEPEGLLRISALHLAKSVVTADVLAEFFR
CHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RYPKVSVEIRYEDHLVDIVKERLDAGIRLADRLQPGMVGVKIAPALTCALVATPGYLAQH
HCCCEEEEEEEHHHHHHHHHHHHHCCCEEHHHCCCCCEEEEHHHHHHHHHHCCCCHHHCC
GTPAKVADLARHMCIRFRFPKSGRLHKWPLRDGRRDVDLDVAGRFVSTDTGAVIDAARAG
CCCHHHHHHHHHHHHEEECCCCCCEEECCCCCCCCCCCHHHCCEEECCCCCHHHHHHHCC
AGIAFVFMRERIEDDLRRGTLREVLPGACRTLPPMWLYYANRKHVPPKLRAFIAVLREHA
CCCHHHHHHHHHHHHHHHCHHHHHCCHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHH
AADGRR
HCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]