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The map label for this gene is kdgR [H]

Identifier: 83718412

GI number: 83718412

Start: 2591502

End: 2592545

Strand: Direct

Name: kdgR [H]

Synonym: BTH_I2299

Alternate gene names: 83718412

Gene position: 2591502-2592545 (Clockwise)

Preceding gene: 83720963

Following gene: 83718463

Centisome position: 68.03

GC content: 70.11

Gene sequence:

>1044_bases
GTGAGCGATCCACGAACTCAGCCGTCGCGTCCCGCGACGATCAGCGACGTCGCCCGCGAGGCGGGCACCGGCAAGACCAG
CGTCTCGCGCTACCTGAACGGCGAAACGAACGTGCTGTCCGCCGACCTGCGCCAGCGCATCGAAGACGCGATCGCGCGCC
TGAACTACCGTCCGAACCAGATGGCGCGCGGCCTCAAACGCGGCCGCAACCGCCTGCTCGGCCTGCTCGCCGCTGACCTG
ACGAATCCCTACACGGTCGAAGTGCTGCGCGGCGTCGAGGCCGCGTGCCACGCGCTCGGCTACATGCCGCTCATCTGCCA
CGCGGCGAACGAGCTCGAGATGGAGCGCCGCTATCTGCAGTTGCTCACGACCTATCGCGTCGAAGGCATGATCGTCAACG
CGCTCGGCGCCGACGAGAACGCGCTGAGATCGCTGCGCGGCGGCGGCATTCCGACCGTGCTCGTCGATCGCAGCGTCGAG
GGCTTCGAGGCCGACATGATCGGCCTCGACAACGCGGCCGCGATCGCCACGGGCTTGCAGCATCTGTTCGCGCAGGGCTT
CCAGTCGCTTCATTTCGTCGTGCAGCCGTTCGAGCACGTGAGCTCGCGGCGGCTGCGCGAGGCCGCGTTCCGTGCGCAGG
TCGCGGCCTCCGGGCGCGCCGTGCATCCGACGATCGTGCTCGAGCCGAGCGATCCGGCATCCGTGCAGCACGCGCTCGCC
GAGCTCGATGCGCGCATCGACGCGGCCGCGGGCGAGCCCATGCGGCCCGCGATCTTCGCGGCGAACGCACCCGTCGCGCT
CGCGATCGCGCGGCACCTGCACGCGCGGTACGGCGATGCATGGCAAAAGCGCGCCGCGCTGATCGCGATCGACGATCCCG
ACTGGGCGGAACTGATCGGCGTGACGACGATCCGCCAGCCGACTTACGACATCGGCTATCGCGCGGTCGAGTTCGTCCAC
GAGCGGATCGACGGCGGCACGGGCGACATCCACGAGGCGCTGCTGCCGGGCGAGCTGCGCGTGCGCGCGTCGACCGCGAG
CTGA

Upstream 100 bases:

>100_bases
AATCGGCCGACAGGAGACATCGTCAGTTGGCCTTTTCATCCAACAACAATGACCCGCCCGTTCACGAGGCGGCGCGGGCC
GCTCGTCACGAGGCGCCACA

Downstream 100 bases:

>100_bases
GTTGAGTATCATTCGGGGCACGCATCGCACCGGTGCGCGTTTCGAACAAGGATTGTCATGACCGTTGCTCCCGTCACGCT
GGCGGCGCTCGTCATCGCCA

Product: LacI family transcription regulator

Products: NA

Alternate protein names: Kdg operon repressor [H]

Number of amino acids: Translated: 347; Mature: 346

Protein sequence:

>347_residues
MSDPRTQPSRPATISDVAREAGTGKTSVSRYLNGETNVLSADLRQRIEDAIARLNYRPNQMARGLKRGRNRLLGLLAADL
TNPYTVEVLRGVEAACHALGYMPLICHAANELEMERRYLQLLTTYRVEGMIVNALGADENALRSLRGGGIPTVLVDRSVE
GFEADMIGLDNAAAIATGLQHLFAQGFQSLHFVVQPFEHVSSRRLREAAFRAQVAASGRAVHPTIVLEPSDPASVQHALA
ELDARIDAAAGEPMRPAIFAANAPVALAIARHLHARYGDAWQKRAALIAIDDPDWAELIGVTTIRQPTYDIGYRAVEFVH
ERIDGGTGDIHEALLPGELRVRASTAS

Sequences:

>Translated_347_residues
MSDPRTQPSRPATISDVAREAGTGKTSVSRYLNGETNVLSADLRQRIEDAIARLNYRPNQMARGLKRGRNRLLGLLAADL
TNPYTVEVLRGVEAACHALGYMPLICHAANELEMERRYLQLLTTYRVEGMIVNALGADENALRSLRGGGIPTVLVDRSVE
GFEADMIGLDNAAAIATGLQHLFAQGFQSLHFVVQPFEHVSSRRLREAAFRAQVAASGRAVHPTIVLEPSDPASVQHALA
ELDARIDAAAGEPMRPAIFAANAPVALAIARHLHARYGDAWQKRAALIAIDDPDWAELIGVTTIRQPTYDIGYRAVEFVH
ERIDGGTGDIHEALLPGELRVRASTAS
>Mature_346_residues
SDPRTQPSRPATISDVAREAGTGKTSVSRYLNGETNVLSADLRQRIEDAIARLNYRPNQMARGLKRGRNRLLGLLAADLT
NPYTVEVLRGVEAACHALGYMPLICHAANELEMERRYLQLLTTYRVEGMIVNALGADENALRSLRGGGIPTVLVDRSVEG
FEADMIGLDNAAAIATGLQHLFAQGFQSLHFVVQPFEHVSSRRLREAAFRAQVAASGRAVHPTIVLEPSDPASVQHALAE
LDARIDAAAGEPMRPAIFAANAPVALAIARHLHARYGDAWQKRAALIAIDDPDWAELIGVTTIRQPTYDIGYRAVEFVHE
RIDGGTGDIHEALLPGELRVRASTAS

Specific function: Transcriptional repressor of the kdg operon for pectin utilization [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790194, Length=319, Percent_Identity=28.2131661442006, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1790369, Length=337, Percent_Identity=24.9258160237389, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787948, Length=321, Percent_Identity=27.7258566978193, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1789202, Length=236, Percent_Identity=28.8135593220339, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI48994940, Length=187, Percent_Identity=29.9465240641711, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1788474, Length=181, Percent_Identity=28.1767955801105, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1787580, Length=323, Percent_Identity=25.6965944272446, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787906, Length=223, Percent_Identity=26.457399103139, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI1790689, Length=271, Percent_Identity=23.9852398523985, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1786540, Length=203, Percent_Identity=27.5862068965517, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786268, Length=216, Percent_Identity=27.3148148148148, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790715, Length=164, Percent_Identity=28.6585365853659, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012310
- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 37702; Mature: 37571

Theoretical pI: Translated: 6.75; Mature: 6.75

Prosite motif: PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDPRTQPSRPATISDVAREAGTGKTSVSRYLNGETNVLSADLRQRIEDAIARLNYRPNQ
CCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCEEHHHHHHHHHHHHHHCCCCHHH
MARGLKRGRNRLLGLLAADLTNPYTVEVLRGVEAACHALGYMPLICHAANELEMERRYLQ
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
LLTTYRVEGMIVNALGADENALRSLRGGGIPTVLVDRSVEGFEADMIGLDNAAAIATGLQ
HHHHHHHCCEEEEECCCCHHHHHHHCCCCCCEEEECCCCCCCCHHHCCCCCHHHHHHHHH
HLFAQGFQSLHFVVQPFEHVSSRRLREAAFRAQVAASGRAVHPTIVLEPSDPASVQHALA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCEEEECCCCCHHHHHHHH
ELDARIDAAAGEPMRPAIFAANAPVALAIARHLHARYGDAWQKRAALIAIDDPDWAELIG
HHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHCCHHHHHCEEEEEECCCCHHHHHH
VTTIRQPTYDIGYRAVEFVHERIDGGTGDIHEALLPGELRVRASTAS
HHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCEEEEECCCC
>Mature Secondary Structure 
SDPRTQPSRPATISDVAREAGTGKTSVSRYLNGETNVLSADLRQRIEDAIARLNYRPNQ
CCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCEEHHHHHHHHHHHHHHCCCCHHH
MARGLKRGRNRLLGLLAADLTNPYTVEVLRGVEAACHALGYMPLICHAANELEMERRYLQ
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
LLTTYRVEGMIVNALGADENALRSLRGGGIPTVLVDRSVEGFEADMIGLDNAAAIATGLQ
HHHHHHHCCEEEEECCCCHHHHHHHCCCCCCEEEECCCCCCCCHHHCCCCCHHHHHHHHH
HLFAQGFQSLHFVVQPFEHVSSRRLREAAFRAQVAASGRAVHPTIVLEPSDPASVQHALA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCEEEECCCCCHHHHHHHH
ELDARIDAAAGEPMRPAIFAANAPVALAIARHLHARYGDAWQKRAALIAIDDPDWAELIG
HHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHCCHHHHHCEEEEEECCCCHHHHHH
VTTIRQPTYDIGYRAVEFVHERIDGGTGDIHEALLPGELRVRASTAS
HHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377 [H]