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The map label for this gene is ybdK [C]

Identifier: 284159412

GI number: 284159412

Start: 1

End: 1248

Strand: Reverse

Name: ybdK [C]

Synonym: BTH_I0001

Alternate gene names: 284159412

Gene position: 1248-1 (Counterclockwise)

Preceding gene: 83721313

Following gene: NA

Centisome position: 0.03

GC content: 63.3

Gene sequence:

>1248_bases
GTGCTCGATCGTCGTGCTGCAACTGATCGGGCCGCTTGTCGTCTATCGCAGCCTGTCGGCCGTCGGCGAGCGGCGCGACG
CGAGTTGACTCGCGCGCCCGACGCTTTGCACCCCGTTATCCGGAACCACGCCATGGCACTCGAAACCTTCGTCAACTCCG
AACCTTTCACGTTCGGCGTCGAACTGGAAATCCAGATCGTCAATACGCACAACTACGATCTGACCAAAGCGGCGTCCGAT
CTGATGCGGCTCATCAAGGATGCGAAATTTCCCGGCAACATCACGCCGGAGATCACCGAAAGCATGATCGAGCTGTCGAC
GGGCATATGCAGAACGCACGATCAGGCATTGGGCGAACTGCACGCGATCCGCGACACGCTCGTCAACGCGGCCGACCAGC
TCAACGTCGGGCTCTGCGGCGGCGGCACGCACGCGTTCCAGCAATGGAGCGAGCGGCAGATCTTCGACGCGCCGCGCTTC
CAGTACATCTCCGAGCTGTACGGCTATCTGGCGAAGCAGTTCACGGTGTTCGGCCAGCACGTGCACATCGGCTGCCCGGA
CGCCGACAGCGCGCTGTTCCTGCTGCACTCGATGTCGCGCTTCATCCCGCATTTCATCGCGCTTTCGGCGTCGTCGCCGT
ACGTGCAGAACGTCGACACCGGATTTCATTCGGCACGCCTGAATTCCGTGTTCGCGTTCCCGCTGTCGGGCCGCGCGCCG
TTCGTGCTCACCTGGAGCGGCTTCGAGGAGTACTTCACGAAGATGGTGAACACGGGCGTCGTCAACAGCATGAAGGATTT
TTATTGGGACATCCGCCCGAAGCCCGGCTACGGAACGATCGAGGTGCGCGTGATGGACACGCCGCTGTCGGTCGATCGCG
CGGCCGCGATCGCGTGCTACATCCAGACGCTCGCGCGCTATCTGCTGATCGACCGGCCGCTCAAGCTGTCGGAGGACGAC
TATCTCGTCTACACGTTCAACCGTTTCGAGGCGTGCCGCTTCGGACTCGAGGGCACCTGCGTGAATCCGCAGACGGGGGA
GCGCAGGACGATCGCCGAGGACATCCTCGACACGCTCGATCGCATCGCGCCGCATGCGGCGGCGCTCGGCTCGCGCGCGG
CGCTCGACGAGATCGGCGCGCTCGCGAAGGCGCGCGTGAACGACGCATCGTGGCTGAGGACCATCTTCAAGCAGGAAAAA
TCGCTGAACGAAACGGTTCGCCAGCAGTGCCTGCGGTGGCGCGAGTGA

Upstream 100 bases:

>100_bases
GCTTCTCGCTCGTGCCGATGTCGGCGCTCGCGTATCTGCTCGTCGACGACACCTACCAGCTCTACCCGAATTTCGATCCG
CGCCTGCGCGCGGTCATCAT

Downstream 100 bases:

>100_bases
AAAATAGTTTTGCAAATCCGCGCACCCGGCGAGCACGGGTTTAGGTTTACCTCGATGTATACGTATGTAAACGTAGTAGT
AGTTAACAAGCTCACGCCGA

Product: carboxylate-amine ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 415; Mature: 415

Protein sequence:

>415_residues
MLDRRAATDRAACRLSQPVGRRRAARRELTRAPDALHPVIRNHAMALETFVNSEPFTFGVELEIQIVNTHNYDLTKAASD
LMRLIKDAKFPGNITPEITESMIELSTGICRTHDQALGELHAIRDTLVNAADQLNVGLCGGGTHAFQQWSERQIFDAPRF
QYISELYGYLAKQFTVFGQHVHIGCPDADSALFLLHSMSRFIPHFIALSASSPYVQNVDTGFHSARLNSVFAFPLSGRAP
FVLTWSGFEEYFTKMVNTGVVNSMKDFYWDIRPKPGYGTIEVRVMDTPLSVDRAAAIACYIQTLARYLLIDRPLKLSEDD
YLVYTFNRFEACRFGLEGTCVNPQTGERRTIAEDILDTLDRIAPHAAALGSRAALDEIGALAKARVNDASWLRTIFKQEK
SLNETVRQQCLRWRE

Sequences:

>Translated_415_residues
MLDRRAATDRAACRLSQPVGRRRAARRELTRAPDALHPVIRNHAMALETFVNSEPFTFGVELEIQIVNTHNYDLTKAASD
LMRLIKDAKFPGNITPEITESMIELSTGICRTHDQALGELHAIRDTLVNAADQLNVGLCGGGTHAFQQWSERQIFDAPRF
QYISELYGYLAKQFTVFGQHVHIGCPDADSALFLLHSMSRFIPHFIALSASSPYVQNVDTGFHSARLNSVFAFPLSGRAP
FVLTWSGFEEYFTKMVNTGVVNSMKDFYWDIRPKPGYGTIEVRVMDTPLSVDRAAAIACYIQTLARYLLIDRPLKLSEDD
YLVYTFNRFEACRFGLEGTCVNPQTGERRTIAEDILDTLDRIAPHAAALGSRAALDEIGALAKARVNDASWLRTIFKQEK
SLNETVRQQCLRWRE
>Mature_415_residues
MLDRRAATDRAACRLSQPVGRRRAARRELTRAPDALHPVIRNHAMALETFVNSEPFTFGVELEIQIVNTHNYDLTKAASD
LMRLIKDAKFPGNITPEITESMIELSTGICRTHDQALGELHAIRDTLVNAADQLNVGLCGGGTHAFQQWSERQIFDAPRF
QYISELYGYLAKQFTVFGQHVHIGCPDADSALFLLHSMSRFIPHFIALSASSPYVQNVDTGFHSARLNSVFAFPLSGRAP
FVLTWSGFEEYFTKMVNTGVVNSMKDFYWDIRPKPGYGTIEVRVMDTPLSVDRAAAIACYIQTLARYLLIDRPLKLSEDD
YLVYTFNRFEACRFGLEGTCVNPQTGERRTIAEDILDTLDRIAPHAAALGSRAALDEIGALAKARVNDASWLRTIFKQEK
SLNETVRQQCLRWRE

Specific function: ATP-dependent carboxylate-amine ligase [H]

COG id: COG2170

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carboxylate-amine ligase family [H]

Homologues:

Organism=Escherichia coli, GI1786795, Length=369, Percent_Identity=46.3414634146341, Blast_Score=365, Evalue=1e-102,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011793
- InterPro:   IPR006336 [H]

Pfam domain/function: PF04107 GCS2 [H]

EC number: NA

Molecular weight: Translated: 46741; Mature: 46741

Theoretical pI: Translated: 7.12; Mature: 7.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDRRAATDRAACRLSQPVGRRRAARRELTRAPDALHPVIRNHAMALETFVNSEPFTFGV
CCCCCCCCHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEE
ELEIQIVNTHNYDLTKAASDLMRLIKDAKFPGNITPEITESMIELSTGICRTHDQALGEL
EEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
HAIRDTLVNAADQLNVGLCGGGTHAFQQWSERQIFDAPRFQYISELYGYLAKQFTVFGQH
HHHHHHHHHHHHHCCEEEECCCHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHCCE
VHIGCPDADSALFLLHSMSRFIPHFIALSASSPYVQNVDTGFHSARLNSVFAFPLSGRAP
EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCHHHHHHCCEEEECCCCCCC
FVLTWSGFEEYFTKMVNTGVVNSMKDFYWDIRPKPGYGTIEVRVMDTPLSVDRAAAIACY
EEEEECCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHH
IQTLARYLLIDRPLKLSEDDYLVYTFNRFEACRFGLEGTCVNPQTGERRTIAEDILDTLD
HHHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHH
RIAPHAAALGSRAALDEIGALAKARVNDASWLRTIFKQEKSLNETVRQQCLRWRE
HHCHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLDRRAATDRAACRLSQPVGRRRAARRELTRAPDALHPVIRNHAMALETFVNSEPFTFGV
CCCCCCCCHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEE
ELEIQIVNTHNYDLTKAASDLMRLIKDAKFPGNITPEITESMIELSTGICRTHDQALGEL
EEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
HAIRDTLVNAADQLNVGLCGGGTHAFQQWSERQIFDAPRFQYISELYGYLAKQFTVFGQH
HHHHHHHHHHHHHCCEEEECCCHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHCCE
VHIGCPDADSALFLLHSMSRFIPHFIALSASSPYVQNVDTGFHSARLNSVFAFPLSGRAP
EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCHHHHHHCCEEEECCCCCCC
FVLTWSGFEEYFTKMVNTGVVNSMKDFYWDIRPKPGYGTIEVRVMDTPLSVDRAAAIACY
EEEEECCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHH
IQTLARYLLIDRPLKLSEDDYLVYTFNRFEACRFGLEGTCVNPQTGERRTIAEDILDTLD
HHHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHH
RIAPHAAALGSRAALDEIGALAKARVNDASWLRTIFKQEKSLNETVRQQCLRWRE
HHCHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA