| Definition | Burkholderia thailandensis E264 chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_007651 |
| Length | 3,809,201 |
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The map label for this gene is fliF [H]
Identifier: 284159411
GI number: 284159411
Start: 233647
End: 235680
Strand: Reverse
Name: fliF [H]
Synonym: BTH_I0200
Alternate gene names: 284159411
Gene position: 235680-233647 (Counterclockwise)
Preceding gene: 83720167
Following gene: 83720510
Centisome position: 6.19
GC content: 69.37
Gene sequence:
>2034_bases GTGATCTCCGCAAAAGAAGCCGGGCCGCGCGGGCCCGGCGGGGGGGGACCCCGGCTTCCCGCGAGCGTTGCGAGGGCCGG ATTGCGAAAAAGCATAGCAGCCGCGCCACGGCGAAAGCCGAAGAAGTACGGCCGAAACCCCGCTCTATTCGTCCGATCGC ACTTGACCGCGCTGCGGATAATCGCACCGTGTCAATGTCCGCCTGCTCTGCCGAGCCGGCATTCAGCCCGCAGTGGAGAT ACTCGACGCATGGACTCGCAGGCCAACTCGCTGATCAACCCCGACGCCCGTTCGAGCCTTGCGGGCGCGCCGCCGCAAGC GGCGGGCGCGCTGCCCGGCGCGGCGGCGGGCGGCGCGGATTTCGGCCTGGGCGGCTTCGCCGAACGCATCCCGGGCCTCG CCCGGATGAAGACCAATCCGCGGCTGCCGTTCCTGATCGGCGCGGCGCTCGCGATCGCCGCGATCGTGGCGCTCGTGCTC TGGAGCCGCGCGCCCGACTATCGCGTGCTGTACAGCAACCTGTCCGACCGCGACGGCGGCGCGATCATCGCCGCGCTCCA GCAGGCAAACGTTCCCTATAAGTTCGCCGACGCGGGCGGCGCGATCCTCGTGCCCGCGAACCAGGTTCACGAGACGCGCC TGAAGCTCGCCGCGATGGGGCTGCCCAAGGGCGGCTCGGTCGGCTTCGAGCTGATGGACAACCAGAAATTCGGCATCAGC CAGTTCGCCGAGCAGGTCAACTACCAGCGCGCGCTCGAAGGCGAGCTGCAGCGCACGGTCGAATCGGTCAACGCGGTGCG CGCCGCGCGCGTGCATCTCGCGATCCCGAAACCGTCGGTATTCGTGCGAGATCGCGAAGCGCCCTCGGCGTCGGTGCTCG TCGATCTGTACCCGGGCCGCGTGCTCGACGAAGGGCAAGTGCTCGCCATCACGCGGCTGGTGTCGTCGAGCGTGCCGGAC ATGCCCGCGAAGAACGTGACGATCGTCGACCAGGACGGCAACCTGCTCACGCAGACCGCGTCGGCCACGGGCCTCGACGC GAGCCAGCTCAAGTACGTGCAGCAGATCGAGCGCAACACGCAAAAGCGCATCGACGCGATCCTCGCGCCCATCTTCGGCG CCGGCAACGCGCGCTCGCAGGTGAGCGCCGACGTCGACTTCTCGAAGATCGAGCAGACCTCGGAAAGCTACGCGCCGAAC GGCACGCCGCAGCAAAGCGCGATTCGCAGCCAGCAGACGAGCACCTCGACCGAGCTCGCGCAAAGCGGCACGTCGGGCGT GCCGGGCGCGCTGTCGAACACGCCGCCGCAGCCGGCGTCCGCGCCGATCGTCGCGAGCAACGGCCAGCCGGCCGCGCCGG CCGCGACGCCCGTCAGCGACCGCAAGGATTCGACGACGAACTACGAGCTCGACAAGACCGTGCGCCACGTCGAGCAATCG ATGGGCACGATCAAGCGGCTGTCGGTCGCGGTCGTCGTCAACTATCAGCCGTCCACCGACGCGAAGGGCCGCGTGACGAT GCAGCCGCTCACCGCGGACAAGCTCGCGCAAGTCCAGCAGCTCGTGAAGGACGCGATGGGCTACGACGAGAAGCGCGGCG ATTCGGTCAACGTCGTCAACAGCGCGTTCTCGGCCGCGGCCGATCCGTTCGCGAACCTGCCGTGGTGGCGCCAGCCCGAC ATGATCGAGCTCGGCAAGGACATCGCGAAGTGGCTGGGCGTCGCCGCGGCCGCCGCCGCGCTGTACTTCATGTTCGTGCG CCCGGCGCTGCGCCGCGCGTTCCCGCCGCCCGCCGAGCCCGCGGCCGCCGTGCCGGCGCTCGACGGCCCGGACGACGCGC TCGCGCTCGACGGCCTGCCGAGCCCCGACAAGAAGCAGCTCGCCGAGGAGGACGAAGAGCATCCGGCCCTGCTCGCCTTC GAAAGCGAGAAGAACCGCTACGAACGCAACCTGGACTACGCGCGCACGATCGCGCGCCAGGACCCGAAGATCGTCGCAAC CGTCGTGAAGAACTGGGTGTCCGATGAACGCTGA
Upstream 100 bases:
>100_bases CGAGCGACGCCGCGGGGCTGGCCGCGCCGCCCGCGGCCTGCGCAGCCATCGCCTGCATCTGTTGCAGCGCCGAAGCGATG CCGTTGACGGGGGCAACCAT
Downstream 100 bases:
>100_bases AGGCTTGACCAAGAGCGCGCTCCTGCTGATGTCGATCGGCGAGGAAGAGGCCGCGCAGGTATTCAAATTCCTCGCGCCGC GCGAAGTGCAGAAGATCGGC
Product: flagellar MS-ring protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 677; Mature: 677
Protein sequence:
>677_residues MISAKEAGPRGPGGGGPRLPASVARAGLRKSIAAAPRRKPKKYGRNPALFVRSHLTALRIIAPCQCPPALPSRHSARSGD TRRMDSQANSLINPDARSSLAGAPPQAAGALPGAAAGGADFGLGGFAERIPGLARMKTNPRLPFLIGAALAIAAIVALVL WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMGLPKGGSVGFELMDNQKFGIS QFAEQVNYQRALEGELQRTVESVNAVRAARVHLAIPKPSVFVRDREAPSASVLVDLYPGRVLDEGQVLAITRLVSSSVPD MPAKNVTIVDQDGNLLTQTASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYAPN GTPQQSAIRSQQTSTSTELAQSGTSGVPGALSNTPPQPASAPIVASNGQPAAPAATPVSDRKDSTTNYELDKTVRHVEQS MGTIKRLSVAVVVNYQPSTDAKGRVTMQPLTADKLAQVQQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPD MIELGKDIAKWLGVAAAAAALYFMFVRPALRRAFPPPAEPAAAVPALDGPDDALALDGLPSPDKKQLAEEDEEHPALLAF ESEKNRYERNLDYARTIARQDPKIVATVVKNWVSDER
Sequences:
>Translated_677_residues MISAKEAGPRGPGGGGPRLPASVARAGLRKSIAAAPRRKPKKYGRNPALFVRSHLTALRIIAPCQCPPALPSRHSARSGD TRRMDSQANSLINPDARSSLAGAPPQAAGALPGAAAGGADFGLGGFAERIPGLARMKTNPRLPFLIGAALAIAAIVALVL WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMGLPKGGSVGFELMDNQKFGIS QFAEQVNYQRALEGELQRTVESVNAVRAARVHLAIPKPSVFVRDREAPSASVLVDLYPGRVLDEGQVLAITRLVSSSVPD MPAKNVTIVDQDGNLLTQTASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYAPN GTPQQSAIRSQQTSTSTELAQSGTSGVPGALSNTPPQPASAPIVASNGQPAAPAATPVSDRKDSTTNYELDKTVRHVEQS MGTIKRLSVAVVVNYQPSTDAKGRVTMQPLTADKLAQVQQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPD MIELGKDIAKWLGVAAAAAALYFMFVRPALRRAFPPPAEPAAAVPALDGPDDALALDGLPSPDKKQLAEEDEEHPALLAF ESEKNRYERNLDYARTIARQDPKIVATVVKNWVSDER >Mature_677_residues MISAKEAGPRGPGGGGPRLPASVARAGLRKSIAAAPRRKPKKYGRNPALFVRSHLTALRIIAPCQCPPALPSRHSARSGD TRRMDSQANSLINPDARSSLAGAPPQAAGALPGAAAGGADFGLGGFAERIPGLARMKTNPRLPFLIGAALAIAAIVALVL WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMGLPKGGSVGFELMDNQKFGIS QFAEQVNYQRALEGELQRTVESVNAVRAARVHLAIPKPSVFVRDREAPSASVLVDLYPGRVLDEGQVLAITRLVSSSVPD MPAKNVTIVDQDGNLLTQTASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYAPN GTPQQSAIRSQQTSTSTELAQSGTSGVPGALSNTPPQPASAPIVASNGQPAAPAATPVSDRKDSTTNYELDKTVRHVEQS MGTIKRLSVAVVVNYQPSTDAKGRVTMQPLTADKLAQVQQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPD MIELGKDIAKWLGVAAAAAALYFMFVRPALRRAFPPPAEPAAAVPALDGPDDALALDGLPSPDKKQLAEEDEEHPALLAF ESEKNRYERNLDYARTIARQDPKIVATVVKNWVSDER
Specific function: The M ring may be actively involved in energy transduction [H]
COG id: COG1766
COG function: function code NU; Flagellar biosynthesis/type III secretory pathway lipoprotein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein. Bacterial flagellum basal body [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fliF family [H]
Homologues:
Organism=Escherichia coli, GI1788248, Length=554, Percent_Identity=45.8483754512635, Blast_Score=474, Evalue=1e-134,
Paralogues:
None
Copy number: 10-20 (rich media) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013556 - InterPro: IPR000067 - InterPro: IPR006182 [H]
Pfam domain/function: PF01514 YscJ_FliF; PF08345 YscJ_FliF_C [H]
EC number: NA
Molecular weight: Translated: 71839; Mature: 71839
Theoretical pI: Translated: 9.78; Mature: 9.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MISAKEAGPRGPGGGGPRLPASVARAGLRKSIAAAPRRKPKKYGRNPALFVRSHLTALRI CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHH IAPCQCPPALPSRHSARSGDTRRMDSQANSLINPDARSSLAGAPPQAAGALPGAAAGGAD HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCHHHCCCCCCCCCCCC FGLGGFAERIPGLARMKTNPRLPFLIGAALAIAAIVALVLWSRAPDYRVLYSNLSDRDGG CCCCHHHHHCCCHHECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC AIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMGLPKGGSVGFELMDNQKFGIS CEEEEHHHCCCCEEEECCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHH QFAEQVNYQRALEGELQRTVESVNAVRAARVHLAIPKPSVFVRDREAPSASVLVDLYPGR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEEECCCCCCCEEEEEECCCC VLDEGQVLAITRLVSSSVPDMPAKNVTIVDQDGNLLTQTASATGLDASQLKYVQQIERNT EECCCCEEHHHHHHHCCCCCCCCCCEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHH QKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYAPNGTPQQSAIRSQQTSTSTELA HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHH QSGTSGVPGALSNTPPQPASAPIVASNGQPAAPAATPVSDRKDSTTNYELDKTVRHVEQS HCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH MGTIKRLSVAVVVNYQPSTDAKGRVTMQPLTADKLAQVQQLVKDAMGYDEKRGDSVNVVN HHHHHHEEEEEEEEECCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCHHCCCCHHHHH SAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAAAALYFMFVRPALRRAFPPPAEP HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC AAAVPALDGPDDALALDGLPSPDKKQLAEEDEEHPALLAFESEKNRYERNLDYARTIARQ CCCCCCCCCCCCCEEECCCCCCCHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHC DPKIVATVVKNWVSDER CCHHHHHHHHHHHCCCC >Mature Secondary Structure MISAKEAGPRGPGGGGPRLPASVARAGLRKSIAAAPRRKPKKYGRNPALFVRSHLTALRI CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHH IAPCQCPPALPSRHSARSGDTRRMDSQANSLINPDARSSLAGAPPQAAGALPGAAAGGAD HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCHHHCCCCCCCCCCCC FGLGGFAERIPGLARMKTNPRLPFLIGAALAIAAIVALVLWSRAPDYRVLYSNLSDRDGG CCCCHHHHHCCCHHECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC AIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMGLPKGGSVGFELMDNQKFGIS CEEEEHHHCCCCEEEECCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHH QFAEQVNYQRALEGELQRTVESVNAVRAARVHLAIPKPSVFVRDREAPSASVLVDLYPGR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEEECCCCCCCEEEEEECCCC VLDEGQVLAITRLVSSSVPDMPAKNVTIVDQDGNLLTQTASATGLDASQLKYVQQIERNT EECCCCEEHHHHHHHCCCCCCCCCCEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHH QKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYAPNGTPQQSAIRSQQTSTSTELA HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHH QSGTSGVPGALSNTPPQPASAPIVASNGQPAAPAATPVSDRKDSTTNYELDKTVRHVEQS HCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH MGTIKRLSVAVVVNYQPSTDAKGRVTMQPLTADKLAQVQQLVKDAMGYDEKRGDSVNVVN HHHHHHEEEEEEEEECCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCHHCCCCHHHHH SAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAAAALYFMFVRPALRRAFPPPAEP HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC AAAVPALDGPDDALALDGLPSPDKKQLAEEDEEHPALLAFESEKNRYERNLDYARTIARQ CCCCCCCCCCCCCEEECCCCCCCHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHC DPKIVATVVKNWVSDER CCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2544561; 11677609; 1551848 [H]