Click here to switch to the map view.

The map label for this gene is yhbJ [H]

Identifier: 83591144

GI number: 83591144

Start: 2444345

End: 2445040

Strand: Reverse

Name: yhbJ [H]

Synonym: Moth_2323

Alternate gene names: 83591144

Gene position: 2445040-2444345 (Counterclockwise)

Preceding gene: 83591145

Following gene: 83591143

Centisome position: 93.01

GC content: 55.6

Gene sequence:

>696_bases
TTGTCAAGGAGGTTAGTAGTCATCCTGGTACTCGTTTTGGCCCTGGCTGGTGCCGGTGCCATTGCCTTTTATTACTACTA
CGAAAATCTTAATTTTGCCAGTACCGACGACGCCCGGGTGGCGGCCGACACAGTGACGGTGAGCCCGGAAATAGCGGGTA
AGCTTTTGGAATGGCGCGTCCAGGAAGGCGATGAGGTTAAAGCCGGTCAGGTCCTGGGCCGCCAGGACCTGGAATCTTCC
CTGACTTCCAGCGCCGTCAACCCCCAGGCTCTAGGAACGGCAGCCGGTGTCATGGCCCAGAAGGCTGAGATTAAGTCTCC
CATCGACGGCCAGGTGATCCAGTCTAAGGCCCTGGTCGGGGAGATGGCGGCTCCTGGCATGGCCCTGGCTATCATCGCCG
ATACTGAACACCTGTATATCAGCGCTAATATTAAAGAAACCGTCATCGAAAAGGTCAAGGTCGGTCAGGTAGTGGATGTT
ACTATTGATGCCTTCCCGGACCGTCATTTCAGCGGCCGGGTGACCAGTATCGGCCGGGCGACGACTTCGGTCTTTTCCCT
GCTCCCGGCCCAGAACTCCAATGGGAATTATACCAAGGTGACCCAGGTCATACCGGTAAAAATCCAGCTCCTGGATGCCA
GCGATGTTAAGCTGCTGCCGGGGATGAATGCCACGGTACGCATTCATATTAGATAA

Upstream 100 bases:

>100_bases
CCCTGGCCGGCGTCCTCCCGGCCTTTTTCCTCCAAAAAGGGCCTGGCGGCGCCCGGCCGGGCTTTGGCGGCGGCGAGTAA
ATGAGAGGAGTGAGCGGTAG

Downstream 100 bases:

>100_bases
TTACGGGAAAATATGCGGTTGAACGGCAAGTTATTCATTGTGGAGGGGAGCAAGCTATGCCAATGTGGGGGAAAAGGGTG
GTAGCCCTTTTGCTTGTAGG

Product: secretion protein HlyD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MSRRLVVILVLVLALAGAGAIAFYYYYENLNFASTDDARVAADTVTVSPEIAGKLLEWRVQEGDEVKAGQVLGRQDLESS
LTSSAVNPQALGTAAGVMAQKAEIKSPIDGQVIQSKALVGEMAAPGMALAIIADTEHLYISANIKETVIEKVKVGQVVDV
TIDAFPDRHFSGRVTSIGRATTSVFSLLPAQNSNGNYTKVTQVIPVKIQLLDASDVKLLPGMNATVRIHIR

Sequences:

>Translated_231_residues
MSRRLVVILVLVLALAGAGAIAFYYYYENLNFASTDDARVAADTVTVSPEIAGKLLEWRVQEGDEVKAGQVLGRQDLESS
LTSSAVNPQALGTAAGVMAQKAEIKSPIDGQVIQSKALVGEMAAPGMALAIIADTEHLYISANIKETVIEKVKVGQVVDV
TIDAFPDRHFSGRVTSIGRATTSVFSLLPAQNSNGNYTKVTQVIPVKIQLLDASDVKLLPGMNATVRIHIR
>Mature_230_residues
SRRLVVILVLVLALAGAGAIAFYYYYENLNFASTDDARVAADTVTVSPEIAGKLLEWRVQEGDEVKAGQVLGRQDLESSL
TSSAVNPQALGTAAGVMAQKAEIKSPIDGQVIQSKALVGEMAAPGMALAIIADTEHLYISANIKETVIEKVKVGQVVDVT
IDAFPDRHFSGRVTSIGRATTSVFSLLPAQNSNGNYTKVTQVIPVKIQLLDASDVKLLPGMNATVRIHIR

Specific function: Unknown

COG id: COG1566

COG function: function code V; Multidrug resistance efflux pump

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]

Homologues:

Organism=Escherichia coli, GI1788711, Length=117, Percent_Identity=38.4615384615385, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1789041, Length=112, Percent_Identity=36.6071428571429, Blast_Score=80, Evalue=8e-17,
Organism=Escherichia coli, GI1790519, Length=125, Percent_Identity=29.6, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000089
- InterPro:   IPR006143
- InterPro:   IPR011053 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 24619; Mature: 24487

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRRLVVILVLVLALAGAGAIAFYYYYENLNFASTDDARVAADTVTVSPEIAGKLLEWRV
CCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCEEEEEEEEECHHHHHHHHHEEC
QEGDEVKAGQVLGRQDLESSLTSSAVNPQALGTAAGVMAQKAEIKSPIDGQVIQSKALVG
CCCCCCCHHHHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
EMAAPGMALAIIADTEHLYISANIKETVIEKVKVGQVVDVTIDAFPDRHFSGRVTSIGRA
HHCCCCEEEEEEECCCEEEEECCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCEEHHHHH
TTSVFSLLPAQNSNGNYTKVTQVIPVKIQLLDASDVKLLPGMNATVRIHIR
HHHHHHHHCCCCCCCCEEEEEEEEEEEEEEECCCCEEECCCCCCEEEEEEC
>Mature Secondary Structure 
SRRLVVILVLVLALAGAGAIAFYYYYENLNFASTDDARVAADTVTVSPEIAGKLLEWRV
CCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCEEEEEEEEECHHHHHHHHHEEC
QEGDEVKAGQVLGRQDLESSLTSSAVNPQALGTAAGVMAQKAEIKSPIDGQVIQSKALVG
CCCCCCCHHHHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
EMAAPGMALAIIADTEHLYISANIKETVIEKVKVGQVVDVTIDAFPDRHFSGRVTSIGRA
HHCCCCEEEEEEECCCEEEEECCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCEEHHHHH
TTSVFSLLPAQNSNGNYTKVTQVIPVKIQLLDASDVKLLPGMNATVRIHIR
HHHHHHHHCCCCCCCCEEEEEEEEEEEEEEECCCCEEECCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]