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The map label for this gene is yahF [H]

Identifier: 83590948

GI number: 83590948

Start: 2218624

End: 2220186

Strand: Reverse

Name: yahF [H]

Synonym: Moth_2122

Alternate gene names: 83590948

Gene position: 2220186-2218624 (Counterclockwise)

Preceding gene: 83590949

Following gene: 83590947

Centisome position: 84.46

GC content: 49.52

Gene sequence:

>1563_bases
GTGGTTATTCGCTGGCTAATTAAACCTAAGATGTATCAGGATTCTGTAAAACTCATGAAGTTATCTGCTGAACTCCGTAA
GCAGGACGGGGTAAAGCAAGCATCTGTGATTATGGCGACGGAGATGAATAAGAGCACTTTACAGGATATAGGTATGTTGG
TGCCAGAAGTAGCTGCTGCCAATGCCGATGATCTGGCGATAATCGTGGCGGCAGATACAGAAGAGCAGGCACAAAAGGCT
GTGGAGTTGGCGGAAAAACTTCTCAACCGTGCTGAAGTGCAACAGGGTGAGACTAAACAGCAATTTCCTAAGACCTTACG
AAGCGCAGTAGAGGCTTTACCTGGTGCAAATCTGGCCCTTATCTCTGTACCAGGAACATATGCGGCAGCTGAGGCGCTTA
AAGCACTGAACCTGGGACTTAACGTGCATCTATTTAGTGATAACGTTACGCTTGAAGATGAGGTCCGGCTCAAGCAAATC
GGAACTAAGAAAGGACTGCTGGTAATGGGGCCGGATTGTGGCACGGCAATTATTGATGGGGTGCCCCTTGCCTTTGCCAA
CGTTGTTGCTCGTGGCAAGATAGGGATTGTTGGCGCTTCAGGAACCGGTATCCAAGAAGCCACTGTTCTGATCGAGCGTT
TGGGAGGAGGTATTTCCCACGCCATAGGCACTGGAGGCAGGGACCTCTTAGATGAAGTTGGCGGGCAAATGATGCTTCTC
GGTATTGATCTTCTTGAAGATGACCCTGCGACAGAGGTTATTTTATTGATCTCAAAACCTGCCGGACCACGGACGGCAAA
TAAAATACTGGATAGGGTTAAGCAGTGTAAGAAACCTGTAGTAGTGAATTTGCTTAAAGGCGATTTAAATGCCATCCAGT
CAGCTGGTGTTGTGGGTGCCGCAACCATCGAAGATGCGGCTTACAAGGCAGTCGCTTTGGCCAATGGAGAAGAAGCAGTT
GCCATGCCGGAAAATTACTGGGGAGATTACTCAAAACAGATCGCCATGCTGGAAAGCCAGCTGGGCCCGAACCAGCGTTA
TATTCGTGGCCTGTTTACAGGGGGCACCCTAGCCGACGAGGCAATGGTGATACTCAGCGATATCGTCGGTGATATCTTCT
CCAATATCCCATTAAAACCAGAACTAAAATTACCTTCAGCAAGGAAAAGCCACAAGCATACCATTGTGGATTTAGGGGAT
GACGAGTTTACAAGAGGGCGTCCCCATCCTATGATAGATCCCCTTCCTCGCAACGAACGTTTAATGCAGGAGTATGCTGA
TCCGGAAGTAGGCGTTATCCTTTGTGATGTAGTTACAGGTTATGGGAGTCACGCTGACCCGGCAGGGGAACTGGCCCGCG
CAGTGGCCCGTGCCCGGGATGCTTATCCGAGCAATAATCCGGCAGTAATTGCCTTTGTGTGTGGTACCGAAGCCGACCCG
CAACCTCTTAGTGAACAGGTCAAAGTCCTCGAAAAAGAAGGGATTTTCGTCTTACCATCCAATGCGGAAGCAGCACGGGC
GGCGGGAAGGATTATCAAGTTACACGAAAGCCGGAGGGTTTAA

Upstream 100 bases:

>100_bases
AATAACATGAAAAAATTACTAGCAAGGGGTGCATCTTCGGGTACAGATACAGCTATTGGATTGCTGTTGGCCCTAGAAAA
CGGAAAGGAGATGCAGCGTA

Downstream 100 bases:

>100_bases
TCATGACTTTAAGTAGAGATTTAATAAATGGTCCTGTCAAGGTTGTTAATGTAGGGCTTGAGTCTTTTGCCCATGACTTG
ACTTCGCTGGGCGTCGCTAA

Product: FdrA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 520; Mature: 520

Protein sequence:

>520_residues
MVIRWLIKPKMYQDSVKLMKLSAELRKQDGVKQASVIMATEMNKSTLQDIGMLVPEVAAANADDLAIIVAADTEEQAQKA
VELAEKLLNRAEVQQGETKQQFPKTLRSAVEALPGANLALISVPGTYAAAEALKALNLGLNVHLFSDNVTLEDEVRLKQI
GTKKGLLVMGPDCGTAIIDGVPLAFANVVARGKIGIVGASGTGIQEATVLIERLGGGISHAIGTGGRDLLDEVGGQMMLL
GIDLLEDDPATEVILLISKPAGPRTANKILDRVKQCKKPVVVNLLKGDLNAIQSAGVVGAATIEDAAYKAVALANGEEAV
AMPENYWGDYSKQIAMLESQLGPNQRYIRGLFTGGTLADEAMVILSDIVGDIFSNIPLKPELKLPSARKSHKHTIVDLGD
DEFTRGRPHPMIDPLPRNERLMQEYADPEVGVILCDVVTGYGSHADPAGELARAVARARDAYPSNNPAVIAFVCGTEADP
QPLSEQVKVLEKEGIFVLPSNAEAARAAGRIIKLHESRRV

Sequences:

>Translated_520_residues
MVIRWLIKPKMYQDSVKLMKLSAELRKQDGVKQASVIMATEMNKSTLQDIGMLVPEVAAANADDLAIIVAADTEEQAQKA
VELAEKLLNRAEVQQGETKQQFPKTLRSAVEALPGANLALISVPGTYAAAEALKALNLGLNVHLFSDNVTLEDEVRLKQI
GTKKGLLVMGPDCGTAIIDGVPLAFANVVARGKIGIVGASGTGIQEATVLIERLGGGISHAIGTGGRDLLDEVGGQMMLL
GIDLLEDDPATEVILLISKPAGPRTANKILDRVKQCKKPVVVNLLKGDLNAIQSAGVVGAATIEDAAYKAVALANGEEAV
AMPENYWGDYSKQIAMLESQLGPNQRYIRGLFTGGTLADEAMVILSDIVGDIFSNIPLKPELKLPSARKSHKHTIVDLGD
DEFTRGRPHPMIDPLPRNERLMQEYADPEVGVILCDVVTGYGSHADPAGELARAVARARDAYPSNNPAVIAFVCGTEADP
QPLSEQVKVLEKEGIFVLPSNAEAARAAGRIIKLHESRRV
>Mature_520_residues
MVIRWLIKPKMYQDSVKLMKLSAELRKQDGVKQASVIMATEMNKSTLQDIGMLVPEVAAANADDLAIIVAADTEEQAQKA
VELAEKLLNRAEVQQGETKQQFPKTLRSAVEALPGANLALISVPGTYAAAEALKALNLGLNVHLFSDNVTLEDEVRLKQI
GTKKGLLVMGPDCGTAIIDGVPLAFANVVARGKIGIVGASGTGIQEATVLIERLGGGISHAIGTGGRDLLDEVGGQMMLL
GIDLLEDDPATEVILLISKPAGPRTANKILDRVKQCKKPVVVNLLKGDLNAIQSAGVVGAATIEDAAYKAVALANGEEAV
AMPENYWGDYSKQIAMLESQLGPNQRYIRGLFTGGTLADEAMVILSDIVGDIFSNIPLKPELKLPSARKSHKHTIVDLGD
DEFTRGRPHPMIDPLPRNERLMQEYADPEVGVILCDVVTGYGSHADPAGELARAVARARDAYPSNNPAVIAFVCGTEADP
QPLSEQVKVLEKEGIFVLPSNAEAARAAGRIIKLHESRRV

Specific function: Unknown

COG id: COG0074

COG function: function code C; Succinyl-CoA synthetase, alpha subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli fdrA and some, to bacterial sucD [H]

Homologues:

Organism=Escherichia coli, GI1786513, Length=516, Percent_Identity=45.7364341085271, Blast_Score=422, Evalue=1e-119,
Organism=Escherichia coli, GI1786729, Length=519, Percent_Identity=40.4624277456647, Blast_Score=310, Evalue=2e-85,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003781
- InterPro:   IPR005811
- InterPro:   IPR016102 [H]

Pfam domain/function: PF02629 CoA_binding; PF00549 Ligase_CoA [H]

EC number: NA

Molecular weight: Translated: 55480; Mature: 55480

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVIRWLIKPKMYQDSVKLMKLSAELRKQDGVKQASVIMATEMNKSTLQDIGMLVPEVAAA
CEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCHHHEEEEECCCHHHHHHHHHHHHHHHCC
NADDLAIIVAADTEEQAQKAVELAEKLLNRAEVQQGETKQQFPKTLRSAVEALPGANLAL
CCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEE
ISVPGTYAAAEALKALNLGLNVHLFSDNVTLEDEVRLKQIGTKKGLLVMGPDCGTAIIDG
EECCCHHHHHHHHHHHHCCCEEEEECCCCEEHHHHHHHHCCCCCCEEEECCCCCCHHHCC
VPLAFANVVARGKIGIVGASGTGIQEATVLIERLGGGISHAIGTGGRDLLDEVGGQMMLL
CHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCHHHHHCCCCHHHHHHCCCCEEEE
GIDLLEDDPATEVILLISKPAGPRTANKILDRVKQCKKPVVVNLLKGDLNAIQSAGVVGA
EEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHCCCEEE
ATIEDAAYKAVALANGEEAVAMPENYWGDYSKQIAMLESQLGPNQRYIRGLFTGGTLADE
EHHHHHHHEEEEEECCCCEEECCHHHCCCHHHHHHHHHHHCCCCHHHHEEEECCCCHHHH
AMVILSDIVGDIFSNIPLKPELKLPSARKSHKHTIVDLGDDEFTRGRPHPMIDPLPRNER
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHH
LMQEYADPEVGVILCDVVTGYGSHADPAGELARAVARARDAYPSNNPAVIAFVCGTEADP
HHHHHCCCCCCEEEEEEHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC
QPLSEQVKVLEKEGIFVLPSNAEAARAAGRIIKLHESRRV
CCHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEECCCCCC
>Mature Secondary Structure
MVIRWLIKPKMYQDSVKLMKLSAELRKQDGVKQASVIMATEMNKSTLQDIGMLVPEVAAA
CEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCHHHEEEEECCCHHHHHHHHHHHHHHHCC
NADDLAIIVAADTEEQAQKAVELAEKLLNRAEVQQGETKQQFPKTLRSAVEALPGANLAL
CCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEE
ISVPGTYAAAEALKALNLGLNVHLFSDNVTLEDEVRLKQIGTKKGLLVMGPDCGTAIIDG
EECCCHHHHHHHHHHHHCCCEEEEECCCCEEHHHHHHHHCCCCCCEEEECCCCCCHHHCC
VPLAFANVVARGKIGIVGASGTGIQEATVLIERLGGGISHAIGTGGRDLLDEVGGQMMLL
CHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCHHHHHCCCCHHHHHHCCCCEEEE
GIDLLEDDPATEVILLISKPAGPRTANKILDRVKQCKKPVVVNLLKGDLNAIQSAGVVGA
EEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHCCCEEE
ATIEDAAYKAVALANGEEAVAMPENYWGDYSKQIAMLESQLGPNQRYIRGLFTGGTLADE
EHHHHHHHEEEEEECCCCEEECCHHHCCCHHHHHHHHHHHCCCCHHHHEEEECCCCHHHH
AMVILSDIVGDIFSNIPLKPELKLPSARKSHKHTIVDLGDDEFTRGRPHPMIDPLPRNER
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHH
LMQEYADPEVGVILCDVVTGYGSHADPAGELARAVARARDAYPSNNPAVIAFVCGTEADP
HHHHHCCCCCCEEEEEEHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC
QPLSEQVKVLEKEGIFVLPSNAEAARAAGRIIKLHESRRV
CCHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]