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The map label for this gene is ytdP [H]

Identifier: 83590939

GI number: 83590939

Start: 2207418

End: 2209064

Strand: Reverse

Name: ytdP [H]

Synonym: Moth_2113

Alternate gene names: 83590939

Gene position: 2209064-2207418 (Counterclockwise)

Preceding gene: 83590940

Following gene: 83590938

Centisome position: 84.03

GC content: 58.96

Gene sequence:

>1647_bases
TTGGCCACGGATATCAAGATCCTGCTTGTCGACGACGAACCCCTGGAGCGCCAGGCCATCCGCTTTTTGCTGGCCAGGGA
GCGCCCTCATTACCAGATTGCCGGGGAAGCGGGTAATGGAGGCGAGGCGGTCAAACTGGCTGCCAGGTTGCGACCGGACA
TCGTCTTCCTGGATATCAAGATGCCCGTCATGGATGGGTTGACCGCCGGTCGGGAGATTCGGGCAATCCTACCCGAGGCC
AGGTTGATTTTTGTTACTGCCTATGGCGAATTCGATTATGCCCGGGAAGCTGTTGCCCTGGGGGCATCCAAATATTTACT
AAAGCCGGTGGCGGCCGAAGAAATGCTTCCCCTCCTGGATGAACTGGCTGCCGGCGTCGCCGCCGCTCGCCGGCGCCAGC
AGGAGACAGCAAGGTTGCGGGCCGCTCTGGAGGAAGCGAAGCCCTTTATTCGCCTGGGCTTTATCATGGACCTGATCAAC
GGTAATATCACCGACGCCGAAGCCGTCAGCCGGGCGCGCTTCCTGGGGATCGCCACCTTGCCCCGTCTGGCCATGTTGGT
GGATATTGATAATTTTGCCGCTCTGGCCCGGGAGGGGACAGAGGTAGAACGGCAGATTTTAAAGCAACAGGTCAAGGAAA
GTCTGGAAAGGGCGACTGTGTCCTGGCCCGGGGCCCTGGTCGCCCCGGTAACCAGGGATGAGTTCGCCATCCTCCTGCCC
CTGGACCACCTGGCCCCGGGTGCAGATAGCCACCAGGCCGCCATCGAGCTGGGAGAAGGCATTTGCCGGCAGGTACGCCG
GGATACCAGGGCTACGGTAACGGTGGGTATCGGCCGGCCGGTGGCAAAGGTTGCTGAACTGGCCCGTTCCTACGCCGAGG
CGGTGGCGGCGGCAGAATTCCGGCTATTTTACGGCGGGGACCAGGTTATCCATGCTGACGACGTTATTGCCCGGCCCAGT
GCCGGCCAGTTCCTGCCGGCTCCCGAGGAGCAGGAATTAACCCAGGCCATCCGTATGGGTGATAGGCAGGCTGCCTACCG
CCAGGCTAAAAATATTTTGATGCAACTCCTCCTGGAGCAGGAAAAACGGCCGGCTATATTGAAGATGAAACTCCTGGAAC
TGAATACCCTGGCGGCCAGGGCCGCCCTGGAGGGCGGTGCCGACCCGGAGGCGGTTTCCGACCTTGCCCTGGCCAGCAGC
ACTGAGTTTCTTACCCTGGACAACCTGGCTGATATGCGGGAGCGCATCCTGGAACGTTTAATGGCCCTGGTGGCCCAGGT
GGCGGAAACCCGGGAGCAGCGCAATTCCTCCCTTATTGACCGGGCCAGCAAGTATATTGAGGCCAATTTCAGCCAGGATC
TCACCCTGGAAGAGGTCGCCCGGCAGGTATATCTTAGCCCCTGTTATTTCAGCAAGCTGTTCAAGCAGTTCAAGGGCTTG
AATTTCATAGATTATCTAACAAAGGTACGCCTCAAGGCGGCCAGGGAGTTATTGCTGAACACCAAGCTCCCGGTAGCGGA
AATCGCCACTCGCGTTGGTTATCGTGATGCTCGCTATTTTGGGCAGGTGTTTAAAAAGCAGGAAGGCTACACGCCCAGTG
TCTTCCGGAAAATAGGGGGTGCCCACTTTGGCAAGAGTACTAGTTGA

Upstream 100 bases:

>100_bases
CAGTATGCCGGGAAAAGGTACTTGCGTCCAGCTGACTTTTCCTTATACTGTGGATTAGGCGTGGGAAAGAGTAAGTTTCC
GAGGGGGGCAGCAACCAGCC

Downstream 100 bases:

>100_bases
TTTCCAGCCAGTGGGCCGGCGGGTAGAGGTTGACGCCGGCCAGACCATTTTGTCTGCTATCCAGCAACTCGGTCTCTCCC
TGGGGGCGGGGGGGCTGACC

Product: two component AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 548; Mature: 547

Protein sequence:

>548_residues
MATDIKILLVDDEPLERQAIRFLLARERPHYQIAGEAGNGGEAVKLAARLRPDIVFLDIKMPVMDGLTAGREIRAILPEA
RLIFVTAYGEFDYAREAVALGASKYLLKPVAAEEMLPLLDELAAGVAAARRRQQETARLRAALEEAKPFIRLGFIMDLIN
GNITDAEAVSRARFLGIATLPRLAMLVDIDNFAALAREGTEVERQILKQQVKESLERATVSWPGALVAPVTRDEFAILLP
LDHLAPGADSHQAAIELGEGICRQVRRDTRATVTVGIGRPVAKVAELARSYAEAVAAAEFRLFYGGDQVIHADDVIARPS
AGQFLPAPEEQELTQAIRMGDRQAAYRQAKNILMQLLLEQEKRPAILKMKLLELNTLAARAALEGGADPEAVSDLALASS
TEFLTLDNLADMRERILERLMALVAQVAETREQRNSSLIDRASKYIEANFSQDLTLEEVARQVYLSPCYFSKLFKQFKGL
NFIDYLTKVRLKAARELLLNTKLPVAEIATRVGYRDARYFGQVFKKQEGYTPSVFRKIGGAHFGKSTS

Sequences:

>Translated_548_residues
MATDIKILLVDDEPLERQAIRFLLARERPHYQIAGEAGNGGEAVKLAARLRPDIVFLDIKMPVMDGLTAGREIRAILPEA
RLIFVTAYGEFDYAREAVALGASKYLLKPVAAEEMLPLLDELAAGVAAARRRQQETARLRAALEEAKPFIRLGFIMDLIN
GNITDAEAVSRARFLGIATLPRLAMLVDIDNFAALAREGTEVERQILKQQVKESLERATVSWPGALVAPVTRDEFAILLP
LDHLAPGADSHQAAIELGEGICRQVRRDTRATVTVGIGRPVAKVAELARSYAEAVAAAEFRLFYGGDQVIHADDVIARPS
AGQFLPAPEEQELTQAIRMGDRQAAYRQAKNILMQLLLEQEKRPAILKMKLLELNTLAARAALEGGADPEAVSDLALASS
TEFLTLDNLADMRERILERLMALVAQVAETREQRNSSLIDRASKYIEANFSQDLTLEEVARQVYLSPCYFSKLFKQFKGL
NFIDYLTKVRLKAARELLLNTKLPVAEIATRVGYRDARYFGQVFKKQEGYTPSVFRKIGGAHFGKSTS
>Mature_547_residues
ATDIKILLVDDEPLERQAIRFLLARERPHYQIAGEAGNGGEAVKLAARLRPDIVFLDIKMPVMDGLTAGREIRAILPEAR
LIFVTAYGEFDYAREAVALGASKYLLKPVAAEEMLPLLDELAAGVAAARRRQQETARLRAALEEAKPFIRLGFIMDLING
NITDAEAVSRARFLGIATLPRLAMLVDIDNFAALAREGTEVERQILKQQVKESLERATVSWPGALVAPVTRDEFAILLPL
DHLAPGADSHQAAIELGEGICRQVRRDTRATVTVGIGRPVAKVAELARSYAEAVAAAEFRLFYGGDQVIHADDVIARPSA
GQFLPAPEEQELTQAIRMGDRQAAYRQAKNILMQLLLEQEKRPAILKMKLLELNTLAARAALEGGADPEAVSDLALASST
EFLTLDNLADMRERILERLMALVAQVAETREQRNSSLIDRASKYIEANFSQDLTLEEVARQVYLSPCYFSKLFKQFKGLN
FIDYLTKVRLKAARELLLNTKLPVAEIATRVGYRDARYFGQVFKKQEGYTPSVFRKIGGAHFGKSTS

Specific function: Unknown

COG id: COG4753

COG function: function code T; Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082052, Length=109, Percent_Identity=44.0366972477064, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1788725, Length=117, Percent_Identity=33.3333333333333, Blast_Score=79, Evalue=9e-16,
Organism=Escherichia coli, GI1790391, Length=104, Percent_Identity=35.5769230769231, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788550, Length=112, Percent_Identity=38.3928571428571, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1788724, Length=138, Percent_Identity=31.1594202898551, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1786251, Length=126, Percent_Identity=30.952380952381, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1788521, Length=152, Percent_Identity=33.5526315789474, Blast_Score=66, Evalue=7e-12,
Organism=Escherichia coli, GI1788222, Length=121, Percent_Identity=32.2314049586777, Blast_Score=62, Evalue=7e-11,
Organism=Escherichia coli, GI87082197, Length=113, Percent_Identity=32.7433628318584, Blast_Score=62, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 60642; Mature: 60511

Theoretical pI: Translated: 7.07; Mature: 7.07

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2 ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATDIKILLVDDEPLERQAIRFLLARERPHYQIAGEAGNGGEAVKLAARLRPDIVFLDIK
CCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHCCCCEEEEEEE
MPVMDGLTAGREIRAILPEARLIFVTAYGEFDYAREAVALGASKYLLKPVAAEEMLPLLD
CHHHHCCCCCCHHHHHCCCCEEEEEEEECCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
ELAAGVAAARRRQQETARLRAALEEAKPFIRLGFIMDLINGNITDAEAVSRARFLGIATL
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
PRLAMLVDIDNFAALAREGTEVERQILKQQVKESLERATVSWPGALVAPVTRDEFAILLP
HHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCEEEEEE
LDHLAPGADSHQAAIELGEGICRQVRRDTRATVTVGIGRPVAKVAELARSYAEAVAAAEF
HHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHE
RLFYGGDQVIHADDVIARPSAGQFLPAPEEQELTQAIRMGDRQAAYRQAKNILMQLLLEQ
EEEECCCEEEECCCCEECCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
EKRPAILKMKLLELNTLAARAALEGGADPEAVSDLALASSTEFLTLDNLADMRERILERL
CCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHH
MALVAQVAETREQRNSSLIDRASKYIEANFSQDLTLEEVARQVYLSPCYFSKLFKQFKGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCC
NFIDYLTKVRLKAARELLLNTKLPVAEIATRVGYRDARYFGQVFKKQEGYTPSVFRKIGG
CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHCC
AHFGKSTS
CCCCCCCC
>Mature Secondary Structure 
ATDIKILLVDDEPLERQAIRFLLARERPHYQIAGEAGNGGEAVKLAARLRPDIVFLDIK
CCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHCCCCEEEEEEE
MPVMDGLTAGREIRAILPEARLIFVTAYGEFDYAREAVALGASKYLLKPVAAEEMLPLLD
CHHHHCCCCCCHHHHHCCCCEEEEEEEECCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
ELAAGVAAARRRQQETARLRAALEEAKPFIRLGFIMDLINGNITDAEAVSRARFLGIATL
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
PRLAMLVDIDNFAALAREGTEVERQILKQQVKESLERATVSWPGALVAPVTRDEFAILLP
HHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCEEEEEE
LDHLAPGADSHQAAIELGEGICRQVRRDTRATVTVGIGRPVAKVAELARSYAEAVAAAEF
HHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHE
RLFYGGDQVIHADDVIARPSAGQFLPAPEEQELTQAIRMGDRQAAYRQAKNILMQLLLEQ
EEEECCCEEEECCCCEECCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
EKRPAILKMKLLELNTLAARAALEGGADPEAVSDLALASSTEFLTLDNLADMRERILERL
CCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHH
MALVAQVAETREQRNSSLIDRASKYIEANFSQDLTLEEVARQVYLSPCYFSKLFKQFKGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCC
NFIDYLTKVRLKAARELLLNTKLPVAEIATRVGYRDARYFGQVFKKQEGYTPSVFRKIGG
CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHCC
AHFGKSTS
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]