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The map label for this gene is ydcN [H]

Identifier: 83590834

GI number: 83590834

Start: 2090791

End: 2091327

Strand: Reverse

Name: ydcN [H]

Synonym: Moth_2004

Alternate gene names: 83590834

Gene position: 2091327-2090791 (Counterclockwise)

Preceding gene: 83590835

Following gene: 83590833

Centisome position: 79.55

GC content: 55.49

Gene sequence:

>537_bases
GTGCTAGGGAAAAAGATACGCCAATTGCGCCGGGAGCGGGGGATGAGCCTTAAGGATGTGGCCGAAAAAACGGGCCTGAC
TTCTAGCTTCCTGAGCCAGGTTGAACGGGACCTTGCAGACCCGTCAATCACATCCCTGCGTAAGATTGCCGAGGCCCTGG
ATATTCCGATCTTTTATTTTCTCTTAAACCCTGAGGATCATAGCCCGGTGGTCAGGAAAGACCAGCGCAAGGTCCTGCGC
TTTCCCCAGTCCCACCTGACCTATGAACTGCTGTCTCCGGATCTGAACCGCAATATGGAGGTTATGATGGCCCGCCTGGA
ACCGGGGGCGGCCAGCTGTGACGAGCCCCTGGCCCATCCGGGGGAGGAGTGCATCGTCGTGCTCCAGGGGGTTATGGAAA
TAGATATCGGTGGCGAGGTTTTCCGGGTAGAAACGGGGGATAGTATCTACTATTACGCCTCAATCCCCCATAAACTCTGG
AGCGTTGGCGAGGAAGAACTGGTCTTTATTTCCGCTATTACCCCGCCGCAATTCTAG

Upstream 100 bases:

>100_bases
TTTATCACCTGGACCTGACGGCCGACACGGCCGAAGACGAAGGCATGGTCTGTGGCGGCGTCATGGACGTATTTATTGAA
CCATTGGAGGTAATAGGGGA

Downstream 100 bases:

>100_bases
GGGAAGGACTTGTATCTCAATGCAACTGCGCCAGGCTTTAGATTTACAAGCCAAGGAGATTATTACCATGGTGGGGGCCG
GGGGTAAGACTTCGGCCCTT

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MLGKKIRQLRRERGMSLKDVAEKTGLTSSFLSQVERDLADPSITSLRKIAEALDIPIFYFLLNPEDHSPVVRKDQRKVLR
FPQSHLTYELLSPDLNRNMEVMMARLEPGAASCDEPLAHPGEECIVVLQGVMEIDIGGEVFRVETGDSIYYYASIPHKLW
SVGEEELVFISAITPPQF

Sequences:

>Translated_178_residues
MLGKKIRQLRRERGMSLKDVAEKTGLTSSFLSQVERDLADPSITSLRKIAEALDIPIFYFLLNPEDHSPVVRKDQRKVLR
FPQSHLTYELLSPDLNRNMEVMMARLEPGAASCDEPLAHPGEECIVVLQGVMEIDIGGEVFRVETGDSIYYYASIPHKLW
SVGEEELVFISAITPPQF
>Mature_178_residues
MLGKKIRQLRRERGMSLKDVAEKTGLTSSFLSQVERDLADPSITSLRKIAEALDIPIFYFLLNPEDHSPVVRKDQRKVLR
FPQSHLTYELLSPDLNRNMEVMMARLEPGAASCDEPLAHPGEECIVVLQGVMEIDIGGEVFRVETGDSIYYYASIPHKLW
SVGEEELVFISAITPPQF

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=177, Percent_Identity=28.2485875706215, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI1787557, Length=178, Percent_Identity=28.0898876404494, Blast_Score=82, Evalue=2e-17,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 20131; Mature: 20131

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: PS00037 MYB_1 ; PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGKKIRQLRRERGMSLKDVAEKTGLTSSFLSQVERDLADPSITSLRKIAEALDIPIFYF
CCCHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEE
LLNPEDHSPVVRKDQRKVLRFPQSHLTYELLSPDLNRNMEVMMARLEPGAASCDEPLAHP
EECCCCCCCCHHHHHHHHHHCCHHHCCHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCC
GEECIVVLQGVMEIDIGGEVFRVETGDSIYYYASIPHKLWSVGEEELVFISAITPPQF
CHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEEECCHHHHCCCCCCEEEEEECCCCCC
>Mature Secondary Structure
MLGKKIRQLRRERGMSLKDVAEKTGLTSSFLSQVERDLADPSITSLRKIAEALDIPIFYF
CCCHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEE
LLNPEDHSPVVRKDQRKVLRFPQSHLTYELLSPDLNRNMEVMMARLEPGAASCDEPLAHP
EECCCCCCCCHHHHHHHHHHCCHHHCCHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCC
GEECIVVLQGVMEIDIGGEVFRVETGDSIYYYASIPHKLWSVGEEELVFISAITPPQF
CHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEEECCHHHHCCCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]