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The map label for this gene is sodF [H]

Identifier: 83590750

GI number: 83590750

Start: 1986156

End: 1986836

Strand: Reverse

Name: sodF [H]

Synonym: Moth_1916

Alternate gene names: 83590750

Gene position: 1986836-1986156 (Counterclockwise)

Preceding gene: 83590751

Following gene: 83590747

Centisome position: 75.58

GC content: 58.3

Gene sequence:

>681_bases
ATGGAAGAAGCACAAAACTTCTGGCTATCTCCTCCCGTGCCTCCCGGCGGGCACCGGTTGCCGCCCTTACCTTATCCTTA
TAATGCCCTGGAACCGGTCATCAGCGAAAGGCAGTTGCGTATCCATCATGACCGCCACCACCTGGCTTATGTTGAAGGGC
TCAACAAAGCGGAGTTGAAGATGGTTGAAGCACGGCAGAAAGGCGACTTTGCCCTGGTGAAGCATTGGGAACGGGAGCTG
GCATTTCACGGGTCCGGGCACATCCTGCATAGCATCTACTGGACGGTAATGGCCCCCTGGTCGGGGAGCGGGCCGGGGAG
TTTAGTACGGGAGAAAATAACCAGTTACTTCGGCAGTATTTCCGCCTTCCAGGAACAATTTACGCGAGCGGCCACTGATG
TGGAGGGCTCCGGTTGGGCGCTCCTTGTCTGGCAGCCGGCCTGGGGTCGCCTGGAGATCTTGATGGCGGAAAAGCATCAG
GATCTGACCCAGTGGGGAGCCATTCCCATCCTGGTACTAGATGTCTGGGAGCACGCCTACTACCTGGATTACCAGAACCG
GCGTGCCGACTACATCAAGGCCTGGTGGCAGCTCGTCAACTGGCCGGAAGTGGAAAGGCGCCTGCAGATGGCCCTCCCGG
CCGGGATGCCCTTAACCTTGAGCGGTTACCTGAATCCGTAG

Upstream 100 bases:

>100_bases
GATAAAGGCAATAATCGAGGCGGCGACGCGGGAAATCATTCTAACCATCTTCGGGAACGGCGCATAAGCTATAAAGAACA
ACTTTCAGGGAGGATATAAT

Downstream 100 bases:

>100_bases
CCTTTCCCCCGAATCCGGAGGAAAAACACCGGGCCGGGACATTAAGAGATTGCTAGCCTCACCAGCCGGAGACATAGGGA
AAAAGGCCGGCCTTTAAGGG

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MEEAQNFWLSPPVPPGGHRLPPLPYPYNALEPVISERQLRIHHDRHHLAYVEGLNKAELKMVEARQKGDFALVKHWEREL
AFHGSGHILHSIYWTVMAPWSGSGPGSLVREKITSYFGSISAFQEQFTRAATDVEGSGWALLVWQPAWGRLEILMAEKHQ
DLTQWGAIPILVLDVWEHAYYLDYQNRRADYIKAWWQLVNWPEVERRLQMALPAGMPLTLSGYLNP

Sequences:

>Translated_226_residues
MEEAQNFWLSPPVPPGGHRLPPLPYPYNALEPVISERQLRIHHDRHHLAYVEGLNKAELKMVEARQKGDFALVKHWEREL
AFHGSGHILHSIYWTVMAPWSGSGPGSLVREKITSYFGSISAFQEQFTRAATDVEGSGWALLVWQPAWGRLEILMAEKHQ
DLTQWGAIPILVLDVWEHAYYLDYQNRRADYIKAWWQLVNWPEVERRLQMALPAGMPLTLSGYLNP
>Mature_226_residues
MEEAQNFWLSPPVPPGGHRLPPLPYPYNALEPVISERQLRIHHDRHHLAYVEGLNKAELKMVEARQKGDFALVKHWEREL
AFHGSGHILHSIYWTVMAPWSGSGPGSLVREKITSYFGSISAFQEQFTRAATDVEGSGWALLVWQPAWGRLEILMAEKHQ
DLTQWGAIPILVLDVWEHAYYLDYQNRRADYIKAWWQLVNWPEVERRLQMALPAGMPLTLSGYLNP

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=192, Percent_Identity=46.3541666666667, Blast_Score=166, Evalue=1e-41,
Organism=Homo sapiens, GI67782305, Length=192, Percent_Identity=46.3541666666667, Blast_Score=166, Evalue=1e-41,
Organism=Homo sapiens, GI67782309, Length=192, Percent_Identity=38.5416666666667, Blast_Score=120, Evalue=8e-28,
Organism=Escherichia coli, GI1787946, Length=191, Percent_Identity=37.696335078534, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1790342, Length=206, Percent_Identity=36.4077669902913, Blast_Score=121, Evalue=3e-29,
Organism=Caenorhabditis elegans, GI17506561, Length=195, Percent_Identity=41.025641025641, Blast_Score=155, Evalue=2e-38,
Organism=Caenorhabditis elegans, GI17569479, Length=194, Percent_Identity=39.1752577319588, Blast_Score=146, Evalue=9e-36,
Organism=Saccharomyces cerevisiae, GI6321796, Length=199, Percent_Identity=35.1758793969849, Blast_Score=125, Evalue=6e-30,
Organism=Drosophila melanogaster, GI17136812, Length=203, Percent_Identity=38.9162561576355, Blast_Score=152, Evalue=2e-37,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 26085; Mature: 26085

Theoretical pI: Translated: 6.75; Mature: 6.75

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEAQNFWLSPPVPPGGHRLPPLPYPYNALEPVISERQLRIHHDRHHLAYVEGLNKAELK
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEECCCHHHHHHHCCCHHHHH
MVEARQKGDFALVKHWERELAFHGSGHILHSIYWTVMAPWSGSGPGSLVREKITSYFGSI
HHHHHCCCCHHHHHHHHHHHHCCCCCHHHHEEEEHEECCCCCCCCHHHHHHHHHHHHHHH
SAFQEQFTRAATDVEGSGWALLVWQPAWGRLEILMAEKHQDLTQWGAIPILVLDVWEHAY
HHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEEHHHHHHHHHCCHHEEEEEHHHHHE
YLDYQNRRADYIKAWWQLVNWPEVERRLQMALPAGMPLTLSGYLNP
EECCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEECCCCCC
>Mature Secondary Structure
MEEAQNFWLSPPVPPGGHRLPPLPYPYNALEPVISERQLRIHHDRHHLAYVEGLNKAELK
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEECCCHHHHHHHCCCHHHHH
MVEARQKGDFALVKHWERELAFHGSGHILHSIYWTVMAPWSGSGPGSLVREKITSYFGSI
HHHHHCCCCHHHHHHHHHHHHCCCCCHHHHEEEEHEECCCCCCCCHHHHHHHHHHHHHHH
SAFQEQFTRAATDVEGSGWALLVWQPAWGRLEILMAEKHQDLTQWGAIPILVLDVWEHAY
HHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEEHHHHHHHHHCCHHEEEEEHHHHHE
YLDYQNRRADYIKAWWQLVNWPEVERRLQMALPAGMPLTLSGYLNP
EECCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]