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The map label for this gene is ydcO [H]

Identifier: 83590607

GI number: 83590607

Start: 1826956

End: 1828203

Strand: Reverse

Name: ydcO [H]

Synonym: Moth_1772

Alternate gene names: 83590607

Gene position: 1828203-1826956 (Counterclockwise)

Preceding gene: 83590608

Following gene: 83590606

Centisome position: 69.55

GC content: 53.12

Gene sequence:

>1248_bases
GTGGCAATTGCTAAAGCCACCACACCTCGAAAGAGTGGCCTGATTGAACCCGGCCCAGGGTATGCTTCTGGTTTCGGCGA
CCTACCGCGCCACTTGAATGTTAATACCGTCACGGCAGGCATCATTGCCACTGTCTTTGGTTGTACCGGTCCGGCTTTGA
TTGTGATGAATGCCGCAGCCAATGGTAAATTGACCCAGGCCCAGACCATCTCCTGGCTCTTTTCCATCTATTTCTTTGGC
GGCCTGCTGGGCGTGTTGCTGGCTGGTTACTACAAACAGCCCATCAACGGCGCCTACTCGATCCCGGGAGCGGTGATGCT
CGCATCAGCCATACCTTTATTCCCCTTTAACCAGGTAGTAGGTGCTTATTTTATTGCTGGCGTTCTGGTACTCTTATTGG
GTATTTCCGGCCTCATCGGTAAAGTTATGCGCTGGCTACCAGGACCAATTGTCATGGCTATGATTGCCGGGGCAATGATT
CGCTTTGGTACCGGGATTATCACCTCGGTCCAAAAGGCACCCCTGATTGCCGGTATCGGCCTGCTGGTCTACCTCCTTAT
GTCCCGGTTAACGAAAAAGGTGTCGCCTGTCCTGGGTGCTCTAGTAGCCGGGGTAATCGCGGCCCTCTTTTTTGGCGGTT
TTAAATTTTCGGCTGTCAACGTTCAGTGGATTGCTCCTCAGGTATTTTGGCCAGAGTTCAGCCTGGGCTCCTTCTTATCC
ATTGGTATTCCCCTCGCGGCACTGGTGGTCGGGGCTGAAAACGCCCAGGCCATCGGCGTCCTCATGGCCGAGGGGTATAA
ACCCCCCATTAATATGATGACCATTGTCAGCGGCATTGGCGGTATAGTGACTTCCTTCTTCGGAGGGCATAATGCCAATA
TCGCCGGTCCCATGACGGCTATCTGCGCTTCCAGTGAAGCAGGAGAAGATAAAAACGGCCGCTATGCAGCCAGTATCGTT
AATGGTGTTACTTTTGGAGCTTTTGGCCTTGTTGCCAGCGTAGCCGTACCCTTTGTCAAGGCTTTGCCGGCGGACCTGGT
ATCTCTCCTGGCTGGCCTGGCTATGATCGGCGTACTGGTTAGCTCCTTTGAAATGGCCTTTGCGTCTAAAAAGTTTAAAG
TCGGAGCGTTCTTTGCCTTGGTCATCGCCATGTCGGGGATCACCGTCTTGAAGATTAGTGCTCCCTTCTGGGCCCTGGTT
GGCGGAGTGGTTGTTTCCCTGCTGGTTGAACCCAAAGACTTTGAGTAA

Upstream 100 bases:

>100_bases
GATAGGCGGCATTCTCCACGGAGGATGCCGCTTCCCTCGAGTTTTGCCAATAGATGGTAATAAATGCCATGCCAGAAAAT
TTCTGAAGGAGGGTCCATTT

Downstream 100 bases:

>100_bases
TGATTAGTTGATAGGGGTTGATAGCCTTGACAGCACGTTATGCCAACCGTATTGAGAAGGCCCGGGAACTGATGATAGAA
AAAGACCTGGATCTGCTCTT

Product: benzoate transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 415; Mature: 414

Protein sequence:

>415_residues
MAIAKATTPRKSGLIEPGPGYASGFGDLPRHLNVNTVTAGIIATVFGCTGPALIVMNAAANGKLTQAQTISWLFSIYFFG
GLLGVLLAGYYKQPINGAYSIPGAVMLASAIPLFPFNQVVGAYFIAGVLVLLLGISGLIGKVMRWLPGPIVMAMIAGAMI
RFGTGIITSVQKAPLIAGIGLLVYLLMSRLTKKVSPVLGALVAGVIAALFFGGFKFSAVNVQWIAPQVFWPEFSLGSFLS
IGIPLAALVVGAENAQAIGVLMAEGYKPPINMMTIVSGIGGIVTSFFGGHNANIAGPMTAICASSEAGEDKNGRYAASIV
NGVTFGAFGLVASVAVPFVKALPADLVSLLAGLAMIGVLVSSFEMAFASKKFKVGAFFALVIAMSGITVLKISAPFWALV
GGVVVSLLVEPKDFE

Sequences:

>Translated_415_residues
MAIAKATTPRKSGLIEPGPGYASGFGDLPRHLNVNTVTAGIIATVFGCTGPALIVMNAAANGKLTQAQTISWLFSIYFFG
GLLGVLLAGYYKQPINGAYSIPGAVMLASAIPLFPFNQVVGAYFIAGVLVLLLGISGLIGKVMRWLPGPIVMAMIAGAMI
RFGTGIITSVQKAPLIAGIGLLVYLLMSRLTKKVSPVLGALVAGVIAALFFGGFKFSAVNVQWIAPQVFWPEFSLGSFLS
IGIPLAALVVGAENAQAIGVLMAEGYKPPINMMTIVSGIGGIVTSFFGGHNANIAGPMTAICASSEAGEDKNGRYAASIV
NGVTFGAFGLVASVAVPFVKALPADLVSLLAGLAMIGVLVSSFEMAFASKKFKVGAFFALVIAMSGITVLKISAPFWALV
GGVVVSLLVEPKDFE
>Mature_414_residues
AIAKATTPRKSGLIEPGPGYASGFGDLPRHLNVNTVTAGIIATVFGCTGPALIVMNAAANGKLTQAQTISWLFSIYFFGG
LLGVLLAGYYKQPINGAYSIPGAVMLASAIPLFPFNQVVGAYFIAGVLVLLLGISGLIGKVMRWLPGPIVMAMIAGAMIR
FGTGIITSVQKAPLIAGIGLLVYLLMSRLTKKVSPVLGALVAGVIAALFFGGFKFSAVNVQWIAPQVFWPEFSLGSFLSI
GIPLAALVVGAENAQAIGVLMAEGYKPPINMMTIVSGIGGIVTSFFGGHNANIAGPMTAICASSEAGEDKNGRYAASIVN
GVTFGAFGLVASVAVPFVKALPADLVSLLAGLAMIGVLVSSFEMAFASKKFKVGAFFALVIAMSGITVLKISAPFWALVG
GVVVSLLVEPKDFE

Specific function: Unknown

COG id: COG3135

COG function: function code Q; Uncharacterized protein involved in benzoate metabolism

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081909, Length=386, Percent_Identity=30.0518134715026, Blast_Score=173, Evalue=2e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004711 [H]

Pfam domain/function: PF03594 BenE [H]

EC number: NA

Molecular weight: Translated: 42700; Mature: 42568

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: PS00189 LIPOYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIAKATTPRKSGLIEPGPGYASGFGDLPRHLNVNTVTAGIIATVFGCTGPALIVMNAAA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCC
NGKLTQAQTISWLFSIYFFGGLLGVLLAGYYKQPINGAYSIPGAVMLASAIPLFPFNQVV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHH
GAYFIAGVLVLLLGISGLIGKVMRWLPGPIVMAMIAGAMIRFGTGIITSVQKAPLIAGIG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
LLVYLLMSRLTKKVSPVLGALVAGVIAALFFGGFKFSAVNVQWIAPQVFWPEFSLGSFLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCEEECCCCCCCHHHH
IGIPLAALVVGAENAQAIGVLMAEGYKPPINMMTIVSGIGGIVTSFFGGHNANIAGPMTA
HHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
ICASSEAGEDKNGRYAASIVNGVTFGAFGLVASVAVPFVKALPADLVSLLAGLAMIGVLV
HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SSFEMAFASKKFKVGAFFALVIAMSGITVLKISAPFWALVGGVVVSLLVEPKDFE
HHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
AIAKATTPRKSGLIEPGPGYASGFGDLPRHLNVNTVTAGIIATVFGCTGPALIVMNAAA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCC
NGKLTQAQTISWLFSIYFFGGLLGVLLAGYYKQPINGAYSIPGAVMLASAIPLFPFNQVV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHH
GAYFIAGVLVLLLGISGLIGKVMRWLPGPIVMAMIAGAMIRFGTGIITSVQKAPLIAGIG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
LLVYLLMSRLTKKVSPVLGALVAGVIAALFFGGFKFSAVNVQWIAPQVFWPEFSLGSFLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCEEECCCCCCCHHHH
IGIPLAALVVGAENAQAIGVLMAEGYKPPINMMTIVSGIGGIVTSFFGGHNANIAGPMTA
HHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
ICASSEAGEDKNGRYAASIVNGVTFGAFGLVASVAVPFVKALPADLVSLLAGLAMIGVLV
HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SSFEMAFASKKFKVGAFFALVIAMSGITVLKISAPFWALVGGVVVSLLVEPKDFE
HHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]