Click here to switch to the map view.

The map label for this gene is ydeD [C]

Identifier: 83590063

GI number: 83590063

Start: 1254304

End: 1255203

Strand: Reverse

Name: ydeD [C]

Synonym: Moth_1215

Alternate gene names: 83590063

Gene position: 1255203-1254304 (Counterclockwise)

Preceding gene: 83590065

Following gene: 83590062

Centisome position: 47.75

GC content: 54.0

Gene sequence:

>900_bases
TTGTCTTTACCCTTACCCGCTCCCAAAACCTCAACATCAATCAAAGACCATCTGAGCTTACTTCTCACGGTTACCATCTG
GGCCAGCACCTTTATCAATATCAAGATAGTCCTCCTCCAGGTGCCCCCCAACACCCTGGCTTTTTTACGCTTCCTGGTGG
CCAGTATTGTTCTGGGTCTTCATCTTATCTGGCGTCGCCAGCCATTTGTGAAGCGACAGGACTGGCCCCTGGCAGGCCTG
ACAGGTTTAACTGGTATCACCCTCTATAATTTCCTGCAAAACCAGGGATTAAAGTATGCCGGCGCCACCGATGCTGCCAT
TCTGGCAGCCATGGCGCCGGTGTTTATCGCCCTGCTGGCCTGGTTATTGCTGAGGGAAAGGATATCCCGGCGCCAGGTGG
CAGGCATTATCATGGCCTTTAGCGGCTCGGTCCTGGTGGCCACCAACGGCTCCCCGGAAGGACTGGTTTTAAACCCGGCC
CGATTGTATGGCGATCTCCTCGTCCTCCTTACGGGCCTCTCCTGGGCGGTCTATAGCATCAGCCTTAAACGGCTGCTTAA
TCGTTATACGCCGGTTACTGTCCTGACCTGTTCGACAATAGCAGGTACCATTTTCTTGTTCCCCCTGGCCCTCCTCGAAT
CTCCTATAAATTGGGCAGCCGTTGATATCTCCTGCTGGCTCAACGTCTTGTACCTGGGTTTACTGGCTTCCGCCCTGGCG
TACTTGATCTGGAATACCGTCCTCACCAGGGTGCCAGCCGTTACCGCCGGGGTTTACCTGTACCTGTTGCCGGTTATAAC
TGCCATTATTGCCGCTCTTTTTCTCCGGGAAATACCCGGAACCTTTACCATAACCGGGGGCATTATTGTCCTGCTTGGCA
CTTATCTGGCCGGCAAGTGA

Upstream 100 bases:

>100_bases
GTAAAAAGATAGCATAATCTGGTGAAGGGGACAACCCAGGTGACGCCGGGCAACCGGAAGGAGTATAATATATCCTGCCT
ATAAAAGGAGGGGCCATCAC

Downstream 100 bases:

>100_bases
GGGGTAGAAGGTATGCCAAGATACAGGACGGGGTTACCGGTGCAGTATCATAGCTATTTTAAGCTCTGGGGCAGGACTTA
AAAGGGTTTTGTAGAAAATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 298

Protein sequence:

>299_residues
MSLPLPAPKTSTSIKDHLSLLLTVTIWASTFINIKIVLLQVPPNTLAFLRFLVASIVLGLHLIWRRQPFVKRQDWPLAGL
TGLTGITLYNFLQNQGLKYAGATDAAILAAMAPVFIALLAWLLLRERISRRQVAGIIMAFSGSVLVATNGSPEGLVLNPA
RLYGDLLVLLTGLSWAVYSISLKRLLNRYTPVTVLTCSTIAGTIFLFPLALLESPINWAAVDISCWLNVLYLGLLASALA
YLIWNTVLTRVPAVTAGVYLYLLPVITAIIAALFLREIPGTFTITGGIIVLLGTYLAGK

Sequences:

>Translated_299_residues
MSLPLPAPKTSTSIKDHLSLLLTVTIWASTFINIKIVLLQVPPNTLAFLRFLVASIVLGLHLIWRRQPFVKRQDWPLAGL
TGLTGITLYNFLQNQGLKYAGATDAAILAAMAPVFIALLAWLLLRERISRRQVAGIIMAFSGSVLVATNGSPEGLVLNPA
RLYGDLLVLLTGLSWAVYSISLKRLLNRYTPVTVLTCSTIAGTIFLFPLALLESPINWAAVDISCWLNVLYLGLLASALA
YLIWNTVLTRVPAVTAGVYLYLLPVITAIIAALFLREIPGTFTITGGIIVLLGTYLAGK
>Mature_298_residues
SLPLPAPKTSTSIKDHLSLLLTVTIWASTFINIKIVLLQVPPNTLAFLRFLVASIVLGLHLIWRRQPFVKRQDWPLAGLT
GLTGITLYNFLQNQGLKYAGATDAAILAAMAPVFIALLAWLLLRERISRRQVAGIIMAFSGSVLVATNGSPEGLVLNPAR
LYGDLLVLLTGLSWAVYSISLKRLLNRYTPVTVLTCSTIAGTIFLFPLALLESPINWAAVDISCWLNVLYLGLLASALAY
LIWNTVLTRVPAVTAGVYLYLLPVITAIIAALFLREIPGTFTITGGIIVLLGTYLAGK

Specific function: Unknown

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

Organism=Escherichia coli, GI87081929, Length=300, Percent_Identity=27.6666666666667, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI87082351, Length=284, Percent_Identity=26.4084507042254, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 32438; Mature: 32307

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLPLPAPKTSTSIKDHLSLLLTVTIWASTFINIKIVLLQVPPNTLAFLRFLVASIVLGL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCHHHHHHHHHHHHHHHH
HLIWRRQPFVKRQDWPLAGLTGLTGITLYNFLQNQGLKYAGATDAAILAAMAPVFIALLA
HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
WLLLRERISRRQVAGIIMAFSGSVLVATNGSPEGLVLNPARLYGDLLVLLTGLSWAVYSI
HHHHHHHHHHHHHHHHHEEECCCEEEEECCCCCCEEECHHHHHHHHHHHHHHHHHHHHHH
SLKRLLNRYTPVTVLTCSTIAGTIFLFPLALLESPINWAAVDISCWLNVLYLGLLASALA
HHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHH
YLIWNTVLTRVPAVTAGVYLYLLPVITAIIAALFLREIPGTFTITGGIIVLLGTYLAGK
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SLPLPAPKTSTSIKDHLSLLLTVTIWASTFINIKIVLLQVPPNTLAFLRFLVASIVLGL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCHHHHHHHHHHHHHHHH
HLIWRRQPFVKRQDWPLAGLTGLTGITLYNFLQNQGLKYAGATDAAILAAMAPVFIALLA
HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
WLLLRERISRRQVAGIIMAFSGSVLVATNGSPEGLVLNPARLYGDLLVLLTGLSWAVYSI
HHHHHHHHHHHHHHHHHEEECCCEEEEECCCCCCEEECHHHHHHHHHHHHHHHHHHHHHH
SLKRLLNRYTPVTVLTCSTIAGTIFLFPLALLESPINWAAVDISCWLNVLYLGLLASALA
HHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHH
YLIWNTVLTRVPAVTAGVYLYLLPVITAIIAALFLREIPGTFTITGGIIVLLGTYLAGK
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]