Click here to switch to the map view.

The map label for this gene is dnaD [H]

Identifier: 83590033

GI number: 83590033

Start: 1216885

End: 1217634

Strand: Reverse

Name: dnaD [H]

Synonym: Moth_1185

Alternate gene names: 83590033

Gene position: 1217634-1216885 (Counterclockwise)

Preceding gene: 83590035

Following gene: 83590032

Centisome position: 46.32

GC content: 52.93

Gene sequence:

>750_bases
ATGGCCATCAGCGGTAATAACTACGAGCTCCTAACAGCGTCCATGCTGGAATGTGGTAGCCTGGTTATTCCCGATATGCT
GTTAAAGTTCTACACCCGCCTGGGCCTGACGGAATTAGAAATGATGGTTTTAATCCACCTCTTTCACTGGCGCCAGGTGG
AGCAGGAACGTTTCCCGGCCCCGGAAAAACTCCGCCAGTACATGAGTGTCGATGAAGAGGAGATCAAGAACCTGATCGCC
TCCCTGATTGAAAAAAAGCTCCTGGCCGTAGAACCCTATTATAACCAGGTCCTGGGCCGCTGGCAGAACACCTTTTCCTT
TGCACCCCTGTGGACGAAACTAACCCGGATAGCCCTGGGGGATTATAACCTGGCAATCACGCCTGAAAAGGAGGCGGCCC
CAACAGCGGTTAAGTACGGAGAACTGTACCGTACCTTTGAAAAGGAGTTTGGCCGGCCCCTGTCTCCCCTGGAAAGCGAA
CAGCTCAGGGAATGGTGCCAGGACGACCGCCTGTCTGTGGAGTTATTGCAGGAAGCCCTGCGGCGGGCGGTACTGCGCGG
TGCTCTTAATTTCAGGTATATCGATTCTATTCTCCGGGATTGGCTACGCCATAACATCCGTACCGTTGCCCAGGCCATTG
ACCACGATGAGCAAAAAAATAAAAGGAAAATCAGGCGGATTAAAACGGAAAATCCGGCCGGCACCAGGGACAAGTATCGC
GAACTTTACCGTCTCAACCCGGAGGGTTAA

Upstream 100 bases:

>100_bases
ATTCAGGCAATGCCCCTTATAACCCCTGAGTGTCTTTGGTTATATTACTGCCTGGTGCTATAATAAAATACTGCTACGAG
ATTCCAGGGGAGGGAAAGTA

Downstream 100 bases:

>100_bases
ACTGGAGGCCTGACCATGGAACGGATCCGTATCCCCCCCAACCTTGTGACCAAAAACCAGCCACCCAACATACCGGCGCC
CAGCCCCCATTACCAGTGCC

Product: DNA replication protein DnaD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 248

Protein sequence:

>249_residues
MAISGNNYELLTASMLECGSLVIPDMLLKFYTRLGLTELEMMVLIHLFHWRQVEQERFPAPEKLRQYMSVDEEEIKNLIA
SLIEKKLLAVEPYYNQVLGRWQNTFSFAPLWTKLTRIALGDYNLAITPEKEAAPTAVKYGELYRTFEKEFGRPLSPLESE
QLREWCQDDRLSVELLQEALRRAVLRGALNFRYIDSILRDWLRHNIRTVAQAIDHDEQKNKRKIRRIKTENPAGTRDKYR
ELYRLNPEG

Sequences:

>Translated_249_residues
MAISGNNYELLTASMLECGSLVIPDMLLKFYTRLGLTELEMMVLIHLFHWRQVEQERFPAPEKLRQYMSVDEEEIKNLIA
SLIEKKLLAVEPYYNQVLGRWQNTFSFAPLWTKLTRIALGDYNLAITPEKEAAPTAVKYGELYRTFEKEFGRPLSPLESE
QLREWCQDDRLSVELLQEALRRAVLRGALNFRYIDSILRDWLRHNIRTVAQAIDHDEQKNKRKIRRIKTENPAGTRDKYR
ELYRLNPEG
>Mature_248_residues
AISGNNYELLTASMLECGSLVIPDMLLKFYTRLGLTELEMMVLIHLFHWRQVEQERFPAPEKLRQYMSVDEEEIKNLIAS
LIEKKLLAVEPYYNQVLGRWQNTFSFAPLWTKLTRIALGDYNLAITPEKEAAPTAVKYGELYRTFEKEFGRPLSPLESEQ
LREWCQDDRLSVELLQEALRRAVLRGALNFRYIDSILRDWLRHNIRTVAQAIDHDEQKNKRKIRRIKTENPAGTRDKYRE
LYRLNPEG

Specific function: Probable component of primosome involved in the initiation of DNA replication [H]

COG id: COG3935

COG function: function code L; Putative primosome component and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006343 [H]

Pfam domain/function: PF07261 DnaB_2 [H]

EC number: NA

Molecular weight: Translated: 29362; Mature: 29231

Theoretical pI: Translated: 8.18; Mature: 8.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAISGNNYELLTASMLECGSLVIPDMLLKFYTRLGLTELEMMVLIHLFHWRQVEQERFPA
CCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCC
PEKLRQYMSVDEEEIKNLIASLIEKKLLAVEPYYNQVLGRWQNTFSFAPLWTKLTRIALG
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
DYNLAITPEKEAAPTAVKYGELYRTFEKEFGRPLSPLESEQLREWCQDDRLSVELLQEAL
CCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHHHH
RRAVLRGALNFRYIDSILRDWLRHNIRTVAQAIDHDEQKNKRKIRRIKTENPAGTRDKYR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHH
ELYRLNPEG
HHHHCCCCC
>Mature Secondary Structure 
AISGNNYELLTASMLECGSLVIPDMLLKFYTRLGLTELEMMVLIHLFHWRQVEQERFPA
CCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCC
PEKLRQYMSVDEEEIKNLIASLIEKKLLAVEPYYNQVLGRWQNTFSFAPLWTKLTRIALG
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
DYNLAITPEKEAAPTAVKYGELYRTFEKEFGRPLSPLESEQLREWCQDDRLSVELLQEAL
CCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHHHH
RRAVLRGALNFRYIDSILRDWLRHNIRTVAQAIDHDEQKNKRKIRRIKTENPAGTRDKYR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHH
ELYRLNPEG
HHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7704260; 8760912; 9384377 [H]