Click here to switch to the map view.

The map label for this gene is ycjC [C]

Identifier: 83589108

GI number: 83589108

Start: 238793

End: 239140

Strand: Reverse

Name: ycjC [C]

Synonym: Moth_0239

Alternate gene names: 83589108

Gene position: 239140-238793 (Counterclockwise)

Preceding gene: 83589121

Following gene: 83589107

Centisome position: 9.1

GC content: 64.08

Gene sequence:

>348_bases
ATGCTGAGGTTCGGCGAGTCTCTAAAGGAGCTGCGCCAGCGGAAGGGCCTGAGGCAGGAAGACGTCGCCAGGATGGTCGG
CGTCGAGCGTCCCACAGTCGCCAACTGGGAGCGTGGGACGAAGCAGCCCGGCCTGGAGACGCTGGTCAGGCTGAGTCGAC
TCTTTGGTGTTTCCCTGGACGAACTGGTGGGCGTCGAAAGAGCCGCCACGCCGTTACCCCTGGCCAGCTATCGTTCCCTG
GCCGCCGACCCGCTGGTAAAGCTCTTAGCCGAGCGGACCGGCGTCCCGGCCAAAAACATCGCCGCCTTTATCGCCGCCCT
CCAGATCCCGGACGATGTTTTACCGTAA

Upstream 100 bases:

>100_bases
TGATGTGCCGTCTGGAAACATTATATGTAATCTGTTGGAAACTTGTCAATAGGATTCCAAACATATAAGGTTTCTATTAG
AAACTACGGAGGTGATAATC

Downstream 100 bases:

>100_bases
CCTTTTAAGCCTTCCCTTTCCATTCCCGTCCAGGCATTGACAGCTATTCCCCCGGCCCCGGTTCGCCGGCGTTCCCTCCC
GGAAGCGCGGCATGTCGATC

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: Xre Family Transcriptional Regulator; XRE Family Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein

Number of amino acids: Translated: 115; Mature: 115

Protein sequence:

>115_residues
MLRFGESLKELRQRKGLRQEDVARMVGVERPTVANWERGTKQPGLETLVRLSRLFGVSLDELVGVERAATPLPLASYRSL
AADPLVKLLAERTGVPAKNIAAFIAALQIPDDVLP

Sequences:

>Translated_115_residues
MLRFGESLKELRQRKGLRQEDVARMVGVERPTVANWERGTKQPGLETLVRLSRLFGVSLDELVGVERAATPLPLASYRSL
AADPLVKLLAERTGVPAKNIAAFIAALQIPDDVLP
>Mature_115_residues
MLRFGESLKELRQRKGLRQEDVARMVGVERPTVANWERGTKQPGLETLVRLSRLFGVSLDELVGVERAATPLPLASYRSL
AADPLVKLLAERTGVPAKNIAAFIAALQIPDDVLP

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12630; Mature: 12630

Theoretical pI: Translated: 10.35; Mature: 10.35

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRFGESLKELRQRKGLRQEDVARMVGVERPTVANWERGTKQPGLETLVRLSRLFGVSLD
CCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHH
ELVGVERAATPLPLASYRSLAADPLVKLLAERTGVPAKNIAAFIAALQIPDDVLP
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLRFGESLKELRQRKGLRQEDVARMVGVERPTVANWERGTKQPGLETLVRLSRLFGVSLD
CCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHH
ELVGVERAATPLPLASYRSLAADPLVKLLAERTGVPAKNIAAFIAALQIPDDVLP
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA