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The map label for this gene is rbfA

Identifier: 83595111

GI number: 83595111

Start: 4332821

End: 4333315

Strand: Direct

Name: rbfA

Synonym: Rru_A3782

Alternate gene names: 83595111

Gene position: 4332821-4333315 (Clockwise)

Preceding gene: 83595110

Following gene: 83595112

Centisome position: 99.54

GC content: 69.9

Gene sequence:

>495_bases
ATGACCAGGACGAGCGACAAAGCCCCCACCCAGCGCCAGCTTCGCGTTGGCGAGGAAATCCGCCATGCCCTGGCCGAGGT
GTTCGAGCGCGGCACTGTGCGCGACCCGGCCGTGGCCGGCGTCGCCCTGACCGTGACCGAGGTCCGGATCAGCCCGGATC
TGCGCAACGCCACGGTGTTTCTGGTGCGTCTGGGCGGTGGTCCGCTCGACGAGGTGCTGACCGGCCTGCGCAAGGCGCGG
GCCTTCCTGCGCCGGGAAGTGGCGATCCGCATCCACACCAAATTCGTTCCCGATCTGCGCTTCGAATCCGATCCGTCGTT
CGATTACGCCGAATACATCAACGGCCTGCTCCACCGCCCCGAAGTCGCCCGCGACCTGGGCGTCCCGCCGTCGGGCGAGG
ATGACGGGGATGACGAGGCGGACGATGAAGACGACGACGGCGGCGAAGAGGGCCCCGGCGCGGCCGCCCCGCCGCCGGCG
GACGAGGGACGATGA

Upstream 100 bases:

>100_bases
CACGCATCAGGGGTCCCCCGGCTTCCAGGGGCAGAGAGGGCCGATCGGCTCCCGCCTTGGTGTTGAGGGGAGGTCCATTA
GAGGAAACTGAGGTCTGACC

Downstream 100 bases:

>100_bases
GCCGGCGCCGGCGCGGTCAGGCGATCCACGGCTGGCTTGCCATCGACAAGCCCGTCGGCATCACCAGCACCGATGTGGTC
AACCGGCTGCGGCGGACGAT

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 163

Protein sequence:

>164_residues
MTRTSDKAPTQRQLRVGEEIRHALAEVFERGTVRDPAVAGVALTVTEVRISPDLRNATVFLVRLGGGPLDEVLTGLRKAR
AFLRREVAIRIHTKFVPDLRFESDPSFDYAEYINGLLHRPEVARDLGVPPSGEDDGDDEADDEDDDGGEEGPGAAAPPPA
DEGR

Sequences:

>Translated_164_residues
MTRTSDKAPTQRQLRVGEEIRHALAEVFERGTVRDPAVAGVALTVTEVRISPDLRNATVFLVRLGGGPLDEVLTGLRKAR
AFLRREVAIRIHTKFVPDLRFESDPSFDYAEYINGLLHRPEVARDLGVPPSGEDDGDDEADDEDDDGGEEGPGAAAPPPA
DEGR
>Mature_163_residues
TRTSDKAPTQRQLRVGEEIRHALAEVFERGTVRDPAVAGVALTVTEVRISPDLRNATVFLVRLGGGPLDEVLTGLRKARA
FLRREVAIRIHTKFVPDLRFESDPSFDYAEYINGLLHRPEVARDLGVPPSGEDDGDDEADDEDDDGGEEGPGAAAPPPAD
EGR

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_RHORT (Q2RMR9)

Other databases:

- EMBL:   CP000230
- RefSeq:   YP_428863.1
- ProteinModelPortal:   Q2RMR9
- STRING:   Q2RMR9
- GeneID:   3837239
- GenomeReviews:   CP000230_GR
- KEGG:   rru:Rru_A3782
- NMPDR:   fig|1085.1.peg.1133
- eggNOG:   COG0858
- HOGENOM:   HBG751055
- OMA:   LRQMKYM
- ProtClustDB:   PRK00521
- BioCyc:   RRUB269796:RRU_A3782-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 17855; Mature: 17724

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRTSDKAPTQRQLRVGEEIRHALAEVFERGTVRDPAVAGVALTVTEVRISPDLRNATVF
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCEEEE
LVRLGGGPLDEVLTGLRKARAFLRREVAIRIHTKFVPDLRFESDPSFDYAEYINGLLHRP
EEEECCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCHHHHHHHHHCCC
EVARDLGVPPSGEDDGDDEADDEDDDGGEEGPGAAAPPPADEGR
HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TRTSDKAPTQRQLRVGEEIRHALAEVFERGTVRDPAVAGVALTVTEVRISPDLRNATVF
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCEEEE
LVRLGGGPLDEVLTGLRKARAFLRREVAIRIHTKFVPDLRFESDPSFDYAEYINGLLHRP
EEEECCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCHHHHHHHHHCCC
EVARDLGVPPSGEDDGDDEADDEDDDGGEEGPGAAAPPPADEGR
HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA