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The map label for this gene is ybeY [C]

Identifier: 83595101

GI number: 83595101

Start: 4320648

End: 4321250

Strand: Direct

Name: ybeY [C]

Synonym: Rru_A3772

Alternate gene names: 83595101

Gene position: 4320648-4321250 (Clockwise)

Preceding gene: 83595100

Following gene: 83595102

Centisome position: 99.26

GC content: 68.99

Gene sequence:

>603_bases
ATGCCCGCTGACCCCGCTTTACCCGATCCCGTCCCCCCCGGCCCGACAGCGCCGGTTCCCACCGACTATCCGGTCCGCCT
TGCCGTCGACGGCGCGGAAGGACCCTGGGAGGCCCTGGTTCCCGGGGTCGCCGCCCTGGTCGAACAGGCCGTTCTCGCCG
CCGTGGCCGCCGGCGATCCCTCGGGCTACGGCCTGACCCCCGGAACGCCGCTGGAAATCAGCCTGCTGCTGACCGATGAC
GCCGCCGTCCAGGCGCTCAATCGCGACTATCGCGGCCAGGACAAGCCGACCAACGTGCTGTCCTTCGCCGCCCTCGACGC
CGAGGAGCCGCTGCCCGAGGATGGCGAGCCGGTTTTGCTGGGCGATGTGGCGCTGGCCCGCGAAACCGTGGTGCGCGAGG
CGGCCGATCTTGGCATCGCCCCGGCCGACCACGTGTTTCATCTGGTTGTCCACGGCGTCTTGCATCTTTTGGGATATGAT
CACGAGGAAGAAGAGGAGGCCCTGGATATGGAAGGCCTGGAGACGGCCATCCTCGGCGCGCGGGGGATCGCCGATCCCTA
TGCCGATGCCCGTGGACCCGAGCAGGAAGGATCCGACCGATGA

Upstream 100 bases:

>100_bases
GTCACCTTTACCCACAAGGATGTCGTGCGCCACGACTTGGTCACCCGCATCGTGCGGGCCTATGACCGCCGCGACGGAAC
CCTGGAAACATCCACCCGCC

Downstream 100 bases:

>100_bases
ACGGTCATTCCGCCTCCGGCGACAGCCCCTCCCGTAGTCGCGATGGCGACTCGGGCGATAAATCGGACTCCGCCAGTCGC
GGCGGTCTGGCGAGTTTCCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 199

Protein sequence:

>200_residues
MPADPALPDPVPPGPTAPVPTDYPVRLAVDGAEGPWEALVPGVAALVEQAVLAAVAAGDPSGYGLTPGTPLEISLLLTDD
AAVQALNRDYRGQDKPTNVLSFAALDAEEPLPEDGEPVLLGDVALARETVVREAADLGIAPADHVFHLVVHGVLHLLGYD
HEEEEEALDMEGLETAILGARGIADPYADARGPEQEGSDR

Sequences:

>Translated_200_residues
MPADPALPDPVPPGPTAPVPTDYPVRLAVDGAEGPWEALVPGVAALVEQAVLAAVAAGDPSGYGLTPGTPLEISLLLTDD
AAVQALNRDYRGQDKPTNVLSFAALDAEEPLPEDGEPVLLGDVALARETVVREAADLGIAPADHVFHLVVHGVLHLLGYD
HEEEEEALDMEGLETAILGARGIADPYADARGPEQEGSDR
>Mature_199_residues
PADPALPDPVPPGPTAPVPTDYPVRLAVDGAEGPWEALVPGVAALVEQAVLAAVAAGDPSGYGLTPGTPLEISLLLTDDA
AVQALNRDYRGQDKPTNVLSFAALDAEEPLPEDGEPVLLGDVALARETVVREAADLGIAPADHVFHLVVHGVLHLLGYDH
EEEEEALDMEGLETAILGARGIADPYADARGPEQEGSDR

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=116, Percent_Identity=48.2758620689655, Blast_Score=89, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_RHORT (Q2RMS9)

Other databases:

- EMBL:   CP000230
- RefSeq:   YP_428853.1
- ProteinModelPortal:   Q2RMS9
- SMR:   Q2RMS9
- STRING:   Q2RMS9
- GeneID:   3837229
- GenomeReviews:   CP000230_GR
- KEGG:   rru:Rru_A3772
- NMPDR:   fig|1085.1.peg.1143
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   HAVEIFV
- PhylomeDB:   Q2RMS9
- BioCyc:   RRUB269796:RRU_A3772-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 20767; Mature: 20636

Theoretical pI: Translated: 3.78; Mature: 3.78

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPADPALPDPVPPGPTAPVPTDYPVRLAVDGAEGPWEALVPGVAALVEQAVLAAVAAGDP
CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
SGYGLTPGTPLEISLLLTDDAAVQALNRDYRGQDKPTNVLSFAALDAEEPLPEDGEPVLL
CCCCCCCCCCEEEEEEEECHHHHHHHHHHCCCCCCCCCHHHHEECCCCCCCCCCCCEEEE
GDVALARETVVREAADLGIAPADHVFHLVVHGVLHLLGYDHEEEEEALDMEGLETAILGA
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHCHHHHHHHHHCC
RGIADPYADARGPEQEGSDR
CCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PADPALPDPVPPGPTAPVPTDYPVRLAVDGAEGPWEALVPGVAALVEQAVLAAVAAGDP
CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
SGYGLTPGTPLEISLLLTDDAAVQALNRDYRGQDKPTNVLSFAALDAEEPLPEDGEPVLL
CCCCCCCCCCEEEEEEEECHHHHHHHHHHCCCCCCCCCHHHHEECCCCCCCCCCCCEEEE
GDVALARETVVREAADLGIAPADHVFHLVVHGVLHLLGYDHEEEEEALDMEGLETAILGA
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHCHHHHHHHHHCC
RGIADPYADARGPEQEGSDR
CCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA