| Definition | Rhodospirillum rubrum ATCC 11170 chromosome, complete genome. |
|---|---|
| Accession | NC_007643 |
| Length | 4,352,825 |
Click here to switch to the map view.
The map label for this gene is 83595068
Identifier: 83595068
GI number: 83595068
Start: 4288755
End: 4290449
Strand: Reverse
Name: 83595068
Synonym: Rru_A3739
Alternate gene names: NA
Gene position: 4290449-4288755 (Counterclockwise)
Preceding gene: 83595082
Following gene: 83595067
Centisome position: 98.57
GC content: 73.22
Gene sequence:
>1695_bases ATGACCGGTTCTAAACGAGTCCGCCGTTTCGCCGCCGCCCGCCGCCGCACGGGACCCGTGGCTTGCGCCCTGGCCGTGGC CGGCACCCTGATCGCCGCCGCGCCCGGTCTGGCCCAATCCCCCTATCCGTTGACGCCGGGCTCGGCGGGAAGCCGCTCGG CCGGGGCGCCGCCGCTCGCCGGGCCCTTCGGTGCGGCCCGCCCGGGACGCCAGGGCATCCTCATGCAGGATCTGGGGGCG CCCAGCGCCGATGGCCTGGGTCTGCTCGCCCCGGCCGAAGGCGGCTTGGGACCGGCCCTGTGGCAGGGCCTCGGTCTGCA AGGCGCCCTGGCTCTGCTTGATGGCCTGCCCCCGGCCCTGGCCTCGCGCGCCATGGCCGATCTGACCCGCCGATTGCTGC TCAGCTCGGCCAATCCGCCGGCCGCCAGCGGCGCCGCGCCCGCCGATAGCCTGCTGCTGCGCCGGGTCGATCTGCTCGGC CGCTATGGTTTCCCCGCCGAGGTGGTCGCCCTGGTCGAGGCTTTGCCGGCGCAATCCCTGACCCCGGCCCTGGCCCGCCG GCGCGCCGAAGCCCTGCTGATACAAAGTCACCCCGAGCAGGCCTGCCAGCCCACCGCCAATCCGCCGCCGACGGCGACCC CCTTGGCCGTCGAGGATGACGTTTTCTGGCACAAGCTGCAGATCTTCTGCCAGCTGCAGGCGGGCAAGCCCGAACAGGCG GCTTTGGGCATGGCGATGCTGCGCGAGCAGGGCATCAAGGACGAAGGCTTCTTCATCCTGGCCGAGCGCATGGGCAAGCT GGCCAAGGGCAAGCCGCGCAAGCCGACGGCTTTCGACGCCCTGACCATCGCCCTTTATCGCGGCGCCGATCAGCCGATTC CGGCGGAAGCCGCCTCGCCCCCCACCCCCTGGCTCGACCGGGCGATCGCGCTCTCGGCGCCAACGCCGCCGGCACAGCGG CTGGCCAGCGCCGAACGGGCCGAAGCCGGCGGCGCCTTGCCCGCCGATGCCCTGGCCTATCTGTATGGCGACACCCCGAT CCGCGCCGCCGACCGCACCAAGATCCTGTCGACCCTGCTGACCGAGGGCACGCCCCTGGCCCGCGCCCAGGCTTTCCAGG CCGTGCGCGCCTTGCGCGATCCCGTGGCCAAGGCCAATGCCGCGGCCGAGTTGCTGCGCGGCCTGCGCCAGCGCGATGGC GGGCTTTATCTGTCGATGGTCCGCGCCCTGCTGCCGTCGCTGCGCGAGATGCTGGTGCTTGATGGGGCCTTGGCCGCCGC CCCGGAGATCGCCCGGGCGTTCTATGGGGTGGGCGACATTCGCGCCGCCGGCCCCTGGGTGCGCCTGCTTCAGGCCAACA GCCGCGACCTGTTTCGCGGGCAGGGCGGTCTGGCCTCGCTGGTGACGATGGACCGCCTGGCCAACCAAGGCGACATCGAC GGCGCTTTTCCGGCCAATCCGGCGGCGATCCTGATGAACCCGGCGGTGTCGCTTGACCGCCTGGGCGCGGCGGCGGCGCG GCGGGCGACCGGCGAAACCGTCCTGCTCGCCCTGTCGACCCTGGCCGGGGTTGGCGGTCCGACCAAGGCGCCGCCGGGGG TGCTGCGTCAGGTGGTCCTCGCCCTCCAGGGGGTTGGCCTGAATGATGCCGCGACCGCCATCGGCCTGGAGGCCCTGGCC GTCCAGGCGCCATGA
Upstream 100 bases:
>100_bases ATTCTCCTGGCTGTCGTGCTTGGCGTTATCGCGCTGGGCGTCACCCTGGCCGGACTTGATGGGGCGCCGCCCCGCCAGAC GGTGGAAAAGGTTATCCCGA
Downstream 100 bases:
>100_bases CCACCGCCGAGTCCGGCGACACGGCGCCAAGCAGCCGCGGACCGTCGCTGGCGGTCCAGGCCGAGGCTTTCCTGGAGATG ATGCTGGCCGAGCGCGGCGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 564; Mature: 563
Protein sequence:
>564_residues MTGSKRVRRFAAARRRTGPVACALAVAGTLIAAAPGLAQSPYPLTPGSAGSRSAGAPPLAGPFGAARPGRQGILMQDLGA PSADGLGLLAPAEGGLGPALWQGLGLQGALALLDGLPPALASRAMADLTRRLLLSSANPPAASGAAPADSLLLRRVDLLG RYGFPAEVVALVEALPAQSLTPALARRRAEALLIQSHPEQACQPTANPPPTATPLAVEDDVFWHKLQIFCQLQAGKPEQA ALGMAMLREQGIKDEGFFILAERMGKLAKGKPRKPTAFDALTIALYRGADQPIPAEAASPPTPWLDRAIALSAPTPPAQR LASAERAEAGGALPADALAYLYGDTPIRAADRTKILSTLLTEGTPLARAQAFQAVRALRDPVAKANAAAELLRGLRQRDG GLYLSMVRALLPSLREMLVLDGALAAAPEIARAFYGVGDIRAAGPWVRLLQANSRDLFRGQGGLASLVTMDRLANQGDID GAFPANPAAILMNPAVSLDRLGAAAARRATGETVLLALSTLAGVGGPTKAPPGVLRQVVLALQGVGLNDAATAIGLEALA VQAP
Sequences:
>Translated_564_residues MTGSKRVRRFAAARRRTGPVACALAVAGTLIAAAPGLAQSPYPLTPGSAGSRSAGAPPLAGPFGAARPGRQGILMQDLGA PSADGLGLLAPAEGGLGPALWQGLGLQGALALLDGLPPALASRAMADLTRRLLLSSANPPAASGAAPADSLLLRRVDLLG RYGFPAEVVALVEALPAQSLTPALARRRAEALLIQSHPEQACQPTANPPPTATPLAVEDDVFWHKLQIFCQLQAGKPEQA ALGMAMLREQGIKDEGFFILAERMGKLAKGKPRKPTAFDALTIALYRGADQPIPAEAASPPTPWLDRAIALSAPTPPAQR LASAERAEAGGALPADALAYLYGDTPIRAADRTKILSTLLTEGTPLARAQAFQAVRALRDPVAKANAAAELLRGLRQRDG GLYLSMVRALLPSLREMLVLDGALAAAPEIARAFYGVGDIRAAGPWVRLLQANSRDLFRGQGGLASLVTMDRLANQGDID GAFPANPAAILMNPAVSLDRLGAAAARRATGETVLLALSTLAGVGGPTKAPPGVLRQVVLALQGVGLNDAATAIGLEALA VQAP >Mature_563_residues TGSKRVRRFAAARRRTGPVACALAVAGTLIAAAPGLAQSPYPLTPGSAGSRSAGAPPLAGPFGAARPGRQGILMQDLGAP SADGLGLLAPAEGGLGPALWQGLGLQGALALLDGLPPALASRAMADLTRRLLLSSANPPAASGAAPADSLLLRRVDLLGR YGFPAEVVALVEALPAQSLTPALARRRAEALLIQSHPEQACQPTANPPPTATPLAVEDDVFWHKLQIFCQLQAGKPEQAA LGMAMLREQGIKDEGFFILAERMGKLAKGKPRKPTAFDALTIALYRGADQPIPAEAASPPTPWLDRAIALSAPTPPAQRL ASAERAEAGGALPADALAYLYGDTPIRAADRTKILSTLLTEGTPLARAQAFQAVRALRDPVAKANAAAELLRGLRQRDGG LYLSMVRALLPSLREMLVLDGALAAAPEIARAFYGVGDIRAAGPWVRLLQANSRDLFRGQGGLASLVTMDRLANQGDIDG AFPANPAAILMNPAVSLDRLGAAAARRATGETVLLALSTLAGVGGPTKAPPGVLRQVVLALQGVGLNDAATAIGLEALAV QAP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57899; Mature: 57767
Theoretical pI: Translated: 10.39; Mature: 10.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGSKRVRRFAAARRRTGPVACALAVAGTLIAAAPGLAQSPYPLTPGSAGSRSAGAPPLA CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC GPFGAARPGRQGILMQDLGAPSADGLGLLAPAEGGLGPALWQGLGLQGALALLDGLPPAL CCCCCCCCCCCCCCHHHCCCCCCCCCEEEECCCCCCCHHHHHCCCHHHHHHHHHCCCHHH ASRAMADLTRRLLLSSANPPAASGAAPADSLLLRRVDLLGRYGFPAEVVALVEALPAQSL HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC TPALARRRAEALLIQSHPEQACQPTANPPPTATPLAVEDDVFWHKLQIFCQLQAGKPEQA CHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHEEECCCCCHHH ALGMAMLREQGIKDEGFFILAERMGKLAKGKPRKPTAFDALTIALYRGADQPIPAEAASP HHHHHHHHHCCCCCCCCEEEHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC PTPWLDRAIALSAPTPPAQRLASAERAEAGGALPADALAYLYGDTPIRAADRTKILSTLL CCHHHHCEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHH TEGTPLARAQAFQAVRALRDPVAKANAAAELLRGLRQRDGGLYLSMVRALLPSLREMLVL HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH DGALAAAPEIARAFYGVGDIRAAGPWVRLLQANSRDLFRGQGGLASLVTMDRLANQGDID HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHCCCCCHHHHHHHHHHCCCCCCC GAFPANPAAILMNPAVSLDRLGAAAARRATGETVLLALSTLAGVGGPTKAPPGVLRQVVL CCCCCCCCEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHH ALQGVGLNDAATAIGLEALAVQAP HHHCCCCCHHHHHHHHHHHEECCC >Mature Secondary Structure TGSKRVRRFAAARRRTGPVACALAVAGTLIAAAPGLAQSPYPLTPGSAGSRSAGAPPLA CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC GPFGAARPGRQGILMQDLGAPSADGLGLLAPAEGGLGPALWQGLGLQGALALLDGLPPAL CCCCCCCCCCCCCCHHHCCCCCCCCCEEEECCCCCCCHHHHHCCCHHHHHHHHHCCCHHH ASRAMADLTRRLLLSSANPPAASGAAPADSLLLRRVDLLGRYGFPAEVVALVEALPAQSL HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC TPALARRRAEALLIQSHPEQACQPTANPPPTATPLAVEDDVFWHKLQIFCQLQAGKPEQA CHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHEEECCCCCHHH ALGMAMLREQGIKDEGFFILAERMGKLAKGKPRKPTAFDALTIALYRGADQPIPAEAASP HHHHHHHHHCCCCCCCCEEEHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC PTPWLDRAIALSAPTPPAQRLASAERAEAGGALPADALAYLYGDTPIRAADRTKILSTLL CCHHHHCEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHH TEGTPLARAQAFQAVRALRDPVAKANAAAELLRGLRQRDGGLYLSMVRALLPSLREMLVL HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH DGALAAAPEIARAFYGVGDIRAAGPWVRLLQANSRDLFRGQGGLASLVTMDRLANQGDID HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHCCCCCHHHHHHHHHHCCCCCCC GAFPANPAAILMNPAVSLDRLGAAAARRATGETVLLALSTLAGVGGPTKAPPGVLRQVVL CCCCCCCCEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHH ALQGVGLNDAATAIGLEALAVQAP HHHCCCCCHHHHHHHHHHHEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA