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The map label for this gene is xerD [H]

Identifier: 83595067

GI number: 83595067

Start: 4287772

End: 4288758

Strand: Reverse

Name: xerD [H]

Synonym: Rru_A3738

Alternate gene names: 83595067

Gene position: 4288758-4287772 (Counterclockwise)

Preceding gene: 83595068

Following gene: 83595062

Centisome position: 98.53

GC content: 72.14

Gene sequence:

>987_bases
ATGACCACCGCCGAGTCCGGCGACACGGCGCCAAGCAGCCGCGGACCGTCGCTGGCGGTCCAGGCCGAGGCTTTCCTGGA
GATGATGCTGGCCGAGCGCGGCGCGGCGCGGCGCACGGTGGAAGCCTATGGCCGCGACCTGCGCGATTACGCGGCCTTCC
TGCGCGAAAAGGGCCTGGACGGGCTGACGGTGTCGCGGCCGACCCTGCGCGCCTATCTGGCGACGATGGCCGCCGCCGGA
CTGGCGCCGCGCAGTCAGGCGCGCAAGCTGTCGTGCCTGCGCCAGTTCCACGGCTTTCTGGTCAGCGAGGGCCGCCGCCC
CGACGACCCCACCATTGGCCTGGATTCGCCGCGCCTTGGCCGACCGCTGCCCCGGGTGCTGTCGGAAGCCGAGGTCGACG
CCTTGCTGGTGGCGGCCGAGGCCGGCGAAGGGGCGCGCGGCCTGCGGGCGCGGGTGCTGCTGGAATTGCTCTATAGCACC
GGCTTGCGGGTCTCCGAGCTGGTCAGCCTGCCGCTGTCGGTGGCCAACCGCGATCCCGAAACCATCCTGGTGCGCGGCAA
GGGCGACAAGGAGCGTCTGGTGCCCCTTGGCCTGCCCGCCCGCGCCGCCCTGCGCGACTGGCTGATCGCCCGGCCGACGA
CCCTGCCCGCAAGCGGCGCGGCGCGGCGCCGGGCCGACCGCTTCTTGTTCCCCTCCTCGGCGGCGGAAGGCCATCTGACG
CGCGACGGCTTCGCCAAGATGCTGGGCGAGTTGGCGCTGCGGGCCGGCATCGATCCGGCCCGGGTTTCCCCCCATGTGCT
GCGCCATTGCTTCGCCAGCCACATGCTGGCCCATGGCGCCGACCTGCGCGGCGTGCAAACCCTGCTCGGCCACGCCGATA
TCGCCACCACCCAGATCTACACCCACGTCCTCGACGACCGCCTGACCACCCTGGTCCGCACCGCCCACCCCTTGGCGCGG
CTCAAGGGGGAGGGAAATAATAAATAG

Upstream 100 bases:

>100_bases
CGCCGGGGGTGCTGCGTCAGGTGGTCCTCGCCCTCCAGGGGGTTGGCCTGAATGATGCCGCGACCGCCATCGGCCTGGAG
GCCCTGGCCGTCCAGGCGCC

Downstream 100 bases:

>100_bases
ATCACCTCTTCAATCAATCTCTTTAGATAACCTAAAGCTATCTAGAATTTTAGTTCCAATTTTTTGGAAATCCTGCCCTT
TATCTATTGGGTGTTCGAAT

Product: tyrosine recombinase XerD subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 327

Protein sequence:

>328_residues
MTTAESGDTAPSSRGPSLAVQAEAFLEMMLAERGAARRTVEAYGRDLRDYAAFLREKGLDGLTVSRPTLRAYLATMAAAG
LAPRSQARKLSCLRQFHGFLVSEGRRPDDPTIGLDSPRLGRPLPRVLSEAEVDALLVAAEAGEGARGLRARVLLELLYST
GLRVSELVSLPLSVANRDPETILVRGKGDKERLVPLGLPARAALRDWLIARPTTLPASGAARRRADRFLFPSSAAEGHLT
RDGFAKMLGELALRAGIDPARVSPHVLRHCFASHMLAHGADLRGVQTLLGHADIATTQIYTHVLDDRLTTLVRTAHPLAR
LKGEGNNK

Sequences:

>Translated_328_residues
MTTAESGDTAPSSRGPSLAVQAEAFLEMMLAERGAARRTVEAYGRDLRDYAAFLREKGLDGLTVSRPTLRAYLATMAAAG
LAPRSQARKLSCLRQFHGFLVSEGRRPDDPTIGLDSPRLGRPLPRVLSEAEVDALLVAAEAGEGARGLRARVLLELLYST
GLRVSELVSLPLSVANRDPETILVRGKGDKERLVPLGLPARAALRDWLIARPTTLPASGAARRRADRFLFPSSAAEGHLT
RDGFAKMLGELALRAGIDPARVSPHVLRHCFASHMLAHGADLRGVQTLLGHADIATTQIYTHVLDDRLTTLVRTAHPLAR
LKGEGNNK
>Mature_327_residues
TTAESGDTAPSSRGPSLAVQAEAFLEMMLAERGAARRTVEAYGRDLRDYAAFLREKGLDGLTVSRPTLRAYLATMAAAGL
APRSQARKLSCLRQFHGFLVSEGRRPDDPTIGLDSPRLGRPLPRVLSEAEVDALLVAAEAGEGARGLRARVLLELLYSTG
LRVSELVSLPLSVANRDPETILVRGKGDKERLVPLGLPARAALRDWLIARPTTLPASGAARRRADRFLFPSSAAEGHLTR
DGFAKMLGELALRAGIDPARVSPHVLRHCFASHMLAHGADLRGVQTLLGHADIATTQIYTHVLDDRLTTLVRTAHPLARL
KGEGNNK

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=298, Percent_Identity=44.2953020134228, Blast_Score=207, Evalue=6e-55,
Organism=Escherichia coli, GI1790244, Length=304, Percent_Identity=34.8684210526316, Blast_Score=147, Evalue=1e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 35374; Mature: 35243

Theoretical pI: Translated: 10.61; Mature: 10.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTAESGDTAPSSRGPSLAVQAEAFLEMMLAERGAARRTVEAYGRDLRDYAAFLREKGLD
CCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCCCC
GLTVSRPTLRAYLATMAAAGLAPRSQARKLSCLRQFHGFLVSEGRRPDDPTIGLDSPRLG
CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
RPLPRVLSEAEVDALLVAAEAGEGARGLRARVLLELLYSTGLRVSELVSLPLSVANRDPE
CCHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCC
TILVRGKGDKERLVPLGLPARAALRDWLIARPTTLPASGAARRRADRFLFPSSAAEGHLT
EEEEECCCCCCCEEECCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCC
RDGFAKMLGELALRAGIDPARVSPHVLRHCFASHMLAHGADLRGVQTLLGHADIATTQIY
HHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHH
THVLDDRLTTLVRTAHPLARLKGEGNNK
HHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TTAESGDTAPSSRGPSLAVQAEAFLEMMLAERGAARRTVEAYGRDLRDYAAFLREKGLD
CCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCCCC
GLTVSRPTLRAYLATMAAAGLAPRSQARKLSCLRQFHGFLVSEGRRPDDPTIGLDSPRLG
CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
RPLPRVLSEAEVDALLVAAEAGEGARGLRARVLLELLYSTGLRVSELVSLPLSVANRDPE
CCHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCC
TILVRGKGDKERLVPLGLPARAALRDWLIARPTTLPASGAARRRADRFLFPSSAAEGHLT
EEEEECCCCCCCEEECCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCC
RDGFAKMLGELALRAGIDPARVSPHVLRHCFASHMLAHGADLRGVQTLLGHADIATTQIY
HHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHH
THVLDDRLTTLVRTAHPLARLKGEGNNK
HHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11214968 [H]