Click here to switch to the map view.

The map label for this gene is 83595021

Identifier: 83595021

GI number: 83595021

Start: 4238066

End: 4238443

Strand: Reverse

Name: 83595021

Synonym: Rru_A3692

Alternate gene names: NA

Gene position: 4238443-4238066 (Counterclockwise)

Preceding gene: 83595022

Following gene: 83595020

Centisome position: 97.37

GC content: 71.43

Gene sequence:

>378_bases
GTGAGGCGGTCGCGGCGCCAGGGGGAACGCCGGGGGCGCTGGGCCGAAAGCCTGTGCGTATGGTGGCTGCGCCTGCACGG
CTGGCGCATCCTTGCCCGCCGCTTCCGCAGCGGCCGGGGAACCGGGGCCGGCGAGGTTGATATCATCGCCCGCCGGGGCC
GGTTGGTCGCCTTCATCGAGGTCAAGGCCCGGGCCGAGGCGGCCCGCGCCCTGGAGGCGATCACCCCGCGCCAAAGGATC
CGCATCACCCGGGGCGCCGAGGCCTTCCTTGGCCGCTTTCCCTTGCCAGAGAAGGGGCAGGCGCGGTTTGATGTGATGGT
GATCGCGCCCTGGGCTTGGCCCAGACATCTCAAGGACGCCTGGCGACTCGGCTTGTAA

Upstream 100 bases:

>100_bases
TGGCGGCGGAAAGCGGCGTCGCCCGCCGCGCGCTCTATCGACGCGCCCTGGAGCTGGCCGGCAAGGCCGATGCCGAAGAT
CGCGAAAGGCCGGGGGAGCG

Downstream 100 bases:

>100_bases
ACCCTCCCTCCCCGAACGAAAGGCCAGGAATGGTCCCATGCGCCGCGTCTGACGCAAGGGTTTGCCCAGCCCGCCGCCGG
CCCTGGCCGTGGGCGGTTCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 125

Protein sequence:

>125_residues
MRRSRRQGERRGRWAESLCVWWLRLHGWRILARRFRSGRGTGAGEVDIIARRGRLVAFIEVKARAEAARALEAITPRQRI
RITRGAEAFLGRFPLPEKGQARFDVMVIAPWAWPRHLKDAWRLGL

Sequences:

>Translated_125_residues
MRRSRRQGERRGRWAESLCVWWLRLHGWRILARRFRSGRGTGAGEVDIIARRGRLVAFIEVKARAEAARALEAITPRQRI
RITRGAEAFLGRFPLPEKGQARFDVMVIAPWAWPRHLKDAWRLGL
>Mature_125_residues
MRRSRRQGERRGRWAESLCVWWLRLHGWRILARRFRSGRGTGAGEVDIIARRGRLVAFIEVKARAEAARALEAITPRQRI
RITRGAEAFLGRFPLPEKGQARFDVMVIAPWAWPRHLKDAWRLGL

Specific function: Unknown

COG id: COG0792

COG function: function code L; Predicted endonuclease distantly related to archaeal Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0102 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3692_RHORT (Q2RN09)

Other databases:

- EMBL:   CP000230
- RefSeq:   YP_428773.1
- ProteinModelPortal:   Q2RN09
- STRING:   Q2RN09
- GeneID:   3837148
- GenomeReviews:   CP000230_GR
- KEGG:   rru:Rru_A3692
- NMPDR:   fig|1085.1.peg.1224
- eggNOG:   COG0792
- HOGENOM:   HBG710155
- OMA:   DIWLARQ
- ProtClustDB:   PRK12497
- BioCyc:   RRUB269796:RRU_A3692-MONOMER
- HAMAP:   MF_00048
- InterPro:   IPR011856
- InterPro:   IPR011335
- InterPro:   IPR003509
- Gene3D:   G3DSA:3.40.1350.10

Pfam domain/function: PF02021 UPF0102; SSF52980 Restrict_endonuc_II-like_core

EC number: NA

Molecular weight: Translated: 14593; Mature: 14593

Theoretical pI: Translated: 12.50; Mature: 12.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRSRRQGERRGRWAESLCVWWLRLHGWRILARRFRSGRGTGAGEVDIIARRGRLVAFIE
CCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEEEEE
VKARAEAARALEAITPRQRIRITRGAEAFLGRFPLPEKGQARFDVMVIAPWAWPRHLKDA
EHHHHHHHHHHHHCCCHHHEEECCCHHHHHCCCCCCCCCCCEEEEEEEECCCCHHHHHHH
WRLGL
HHCCC
>Mature Secondary Structure
MRRSRRQGERRGRWAESLCVWWLRLHGWRILARRFRSGRGTGAGEVDIIARRGRLVAFIE
CCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEEEEE
VKARAEAARALEAITPRQRIRITRGAEAFLGRFPLPEKGQARFDVMVIAPWAWPRHLKDA
EHHHHHHHHHHHHCCCHHHEEECCCHHHHHCCCCCCCCCCCEEEEEEEECCCCHHHHHHH
WRLGL
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA