| Definition | Rhodospirillum rubrum ATCC 11170 chromosome, complete genome. |
|---|---|
| Accession | NC_007643 |
| Length | 4,352,825 |
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The map label for this gene is yceI [C]
Identifier: 83595010
GI number: 83595010
Start: 4229220
End: 4229825
Strand: Direct
Name: yceI [C]
Synonym: Rru_A3681
Alternate gene names: 83595010
Gene position: 4229220-4229825 (Clockwise)
Preceding gene: 83594999
Following gene: 83595011
Centisome position: 97.16
GC content: 62.71
Gene sequence:
>606_bases ATGACTGCGATCCGTTCCCGCGCGACCCGCGCCTTCGCCCCGCTCGCCCTGGCCGCCGGCCTTGGGCTGTTCGCCATCCA CCCGGCCCTGGCGGCGCCCGAGACCTATAAGGTCGATCCCGCCCACACCCATGTGCTGTTCAAGGTCAGCCATTTCGGCT TCTCCACCTTCGTCGGCAAGTTCAAAACCTTCGAGGGCAGCGTCGTTCTTGACGAGGCCAAGCCCGCTGACAGCAAGGTC GCTTTCACCATCGATTTGGCCGGGGTGTCGACCGATGTCGCCAAGCTCGACGAGCACCTGAAGTCGGCCGATTTCTTCGA TGTCGCCAAATTCCCCACCGCCACCTTCAAAAGCACCGCCGTGACCCTGACCGGCGACAAGACCGCCAAGGTCGTTGGCG ATCTGACCCTGCATGGCGTGACCAAGCCCGTCACCCTTGATGTCGTCCTCAACAAAATCGGCGCCAATCCGGTGTCCAAC GCCCAATCCGCCGGCTTTGGCGCGACGACCACCCTCAAGCGCAGCGATTTCGGCATCACCACCTATTCGCCCAACATCGG CGAGGACGTGGTGATCGAGATCCAGTTGGAAGGCCAGCGGTCCTAA
Upstream 100 bases:
>100_bases TCCCGGTTCCCCCGGCGCTCCGCAACCCCCACCTTGTTGGGGTACGGCGGCCTGAAGGGGCCTTAAGCCGTGCAGGAACC CAAGACTGGAGATCCGTTCA
Downstream 100 bases:
>100_bases GGTTTCGTTCTTTTAGGAGGATCGGTCATGGCCCTTCCCTTCGGCGACGAGGCCGCGCGCTACGGCGCGGTCAGCCGGAT CGCCCATTGGCTTACCGCCC
Product: YceI
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 201; Mature: 200
Protein sequence:
>201_residues MTAIRSRATRAFAPLALAAGLGLFAIHPALAAPETYKVDPAHTHVLFKVSHFGFSTFVGKFKTFEGSVVLDEAKPADSKV AFTIDLAGVSTDVAKLDEHLKSADFFDVAKFPTATFKSTAVTLTGDKTAKVVGDLTLHGVTKPVTLDVVLNKIGANPVSN AQSAGFGATTTLKRSDFGITTYSPNIGEDVVIEIQLEGQRS
Sequences:
>Translated_201_residues MTAIRSRATRAFAPLALAAGLGLFAIHPALAAPETYKVDPAHTHVLFKVSHFGFSTFVGKFKTFEGSVVLDEAKPADSKV AFTIDLAGVSTDVAKLDEHLKSADFFDVAKFPTATFKSTAVTLTGDKTAKVVGDLTLHGVTKPVTLDVVLNKIGANPVSN AQSAGFGATTTLKRSDFGITTYSPNIGEDVVIEIQLEGQRS >Mature_200_residues TAIRSRATRAFAPLALAAGLGLFAIHPALAAPETYKVDPAHTHVLFKVSHFGFSTFVGKFKTFEGSVVLDEAKPADSKVA FTIDLAGVSTDVAKLDEHLKSADFFDVAKFPTATFKSTAVTLTGDKTAKVVGDLTLHGVTKPVTLDVVLNKIGANPVSNA QSAGFGATTTLKRSDFGITTYSPNIGEDVVIEIQLEGQRS
Specific function: Unknown
COG id: COG2353
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0312 family. Type 1 subfamily [H]
Homologues:
Organism=Escherichia coli, GI1787295, Length=178, Percent_Identity=42.6966292134831, Blast_Score=125, Evalue=2e-30,
Paralogues:
None
Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007372 [H]
Pfam domain/function: PF04264 YceI [H]
EC number: NA
Molecular weight: Translated: 21196; Mature: 21065
Theoretical pI: Translated: 7.94; Mature: 7.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 0.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAIRSRATRAFAPLALAAGLGLFAIHPALAAPETYKVDPAHTHVLFKVSHFGFSTFVGK CCCCHHHHHHHHHHHHHHHCCCCEEECHHHCCCCCEEECCCCEEEEEEEECCCHHHHHHH FKTFEGSVVLDEAKPADSKVAFTIDLAGVSTDVAKLDEHLKSADFFDVAKFPTATFKSTA HEECCCCEEEECCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCHHHHCCCCCCCCCEE VTLTGDKTAKVVGDLTLHGVTKPVTLDVVLNKIGANPVSNAQSAGFGATTTLKRSDFGIT EEEECCCCEEEEEEEEECCCCCCEEHEEEHHHHCCCCCCCCCCCCCCCEEEEECCCCCEE TYSPNIGEDVVIEIQLEGQRS EECCCCCCEEEEEEEECCCCC >Mature Secondary Structure TAIRSRATRAFAPLALAAGLGLFAIHPALAAPETYKVDPAHTHVLFKVSHFGFSTFVGK CCCHHHHHHHHHHHHHHHCCCCEEECHHHCCCCCEEECCCCEEEEEEEECCCHHHHHHH FKTFEGSVVLDEAKPADSKVAFTIDLAGVSTDVAKLDEHLKSADFFDVAKFPTATFKSTA HEECCCCEEEECCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCHHHHCCCCCCCCCEE VTLTGDKTAKVVGDLTLHGVTKPVTLDVVLNKIGANPVSNAQSAGFGATTTLKRSDFGIT EEEECCCCEEEEEEEEECCCCCCEEHEEEHHHHCCCCCCCCCCCCCCCEEEEECCCCCEE TYSPNIGEDVVIEIQLEGQRS EECCCCCCEEEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA