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The map label for this gene is 83594978

Identifier: 83594978

GI number: 83594978

Start: 4188468

End: 4189067

Strand: Reverse

Name: 83594978

Synonym: Rru_A3649

Alternate gene names: NA

Gene position: 4189067-4188468 (Counterclockwise)

Preceding gene: 83594979

Following gene: 83594976

Centisome position: 96.24

GC content: 66.17

Gene sequence:

>600_bases
ATGGTGCGTTTGTTCATCGCCCTGACCCTTGACGACTCGCTGCGCGCCCGCTTGAGCGGTCTGGAAGCCGGCATCCCCGG
CGCGCGCTGGGCGCCCGCCCAGAACCTTCATGTGACCTTGCGCTTTCTTGGCGAGACCGAGGAGGGACTGGCGCGCGAGA
TTGATGCCGCCCTGCTGTCGGTGCGGGCCGAGCCCTTCACCCTGCCGATTGCCGGCCTGGGGGTGTTCGGCGGCGAGCGC
CGGCCGCGCCTGCTGTGGGCGGGGGTGGAAAAAACACCGGCCCTGACCTTGCTCAAAGGGCGGATCGACGCCGCGCTGCG
CGGGCTGGGCGTCGGGCCCGACGAGCATGTTTATTCCCCGCACATCAGCCTCGCCCGCCTCAAGACTCCCGACCCCGAGC
GGTTGCGGCGCTTCGTCGAGGCCAATAATCTGTCGGTGCGCGGCTCTTTGACGGTGACAAGCTTCTCGCTGTTTTCCAGC
CTGCTGACCGGCGAGGGCCCGCTCTATCGCGAAGAGGCGGTCTATCCCTTGGCCGCTTACCGCCCCGAGGCCCTAGATCA
AACTGCGTTAAAGGAGTCTCCTTTAACGCAGAAACTTTGA

Upstream 100 bases:

>100_bases
GGTGATCGTGGCCAGGATCTTGCCCCAGGCCGAGGCCCTGATCGCCCGGGCCCGCAAGGCCGCCTCGCCCTAAGCCCGCT
TAGCATAAGGATAAAAGCCG

Downstream 100 bases:

>100_bases
TCTAGAGTCTATAATTTGGAGCGGCGATAACGCGGAAAACCGGTACCCACTTTTCCGCTCGCCGCTCTGGGGCCGCTCAC
AGGCCAAAACGGCTGAGCAG

Product: 2',5' RNA ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MVRLFIALTLDDSLRARLSGLEAGIPGARWAPAQNLHVTLRFLGETEEGLAREIDAALLSVRAEPFTLPIAGLGVFGGER
RPRLLWAGVEKTPALTLLKGRIDAALRGLGVGPDEHVYSPHISLARLKTPDPERLRRFVEANNLSVRGSLTVTSFSLFSS
LLTGEGPLYREEAVYPLAAYRPEALDQTALKESPLTQKL

Sequences:

>Translated_199_residues
MVRLFIALTLDDSLRARLSGLEAGIPGARWAPAQNLHVTLRFLGETEEGLAREIDAALLSVRAEPFTLPIAGLGVFGGER
RPRLLWAGVEKTPALTLLKGRIDAALRGLGVGPDEHVYSPHISLARLKTPDPERLRRFVEANNLSVRGSLTVTSFSLFSS
LLTGEGPLYREEAVYPLAAYRPEALDQTALKESPLTQKL
>Mature_199_residues
MVRLFIALTLDDSLRARLSGLEAGIPGARWAPAQNLHVTLRFLGETEEGLAREIDAALLSVRAEPFTLPIAGLGVFGGER
RPRLLWAGVEKTPALTLLKGRIDAALRGLGVGPDEHVYSPHISLARLKTPDPERLRRFVEANNLSVRGSLTVTSFSLFSS
LLTGEGPLYREEAVYPLAAYRPEALDQTALKESPLTQKL

Specific function: Unknown

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0097 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004175
- InterPro:   IPR014051
- InterPro:   IPR009097 [H]

Pfam domain/function: PF02834 2_5_RNA_ligase [H]

EC number: NA

Molecular weight: Translated: 21704; Mature: 21704

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRLFIALTLDDSLRARLSGLEAGIPGARWAPAQNLHVTLRFLGETEEGLAREIDAALLS
CEEEEEEEEECHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHH
VRAEPFTLPIAGLGVFGGERRPRLLWAGVEKTPALTLLKGRIDAALRGLGVGPDEHVYSP
HCCCCEEEEEEECEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCEECC
HISLARLKTPDPERLRRFVEANNLSVRGSLTVTSFSLFSSLLTGEGPLYREEAVYPLAAY
CCEEEEECCCCHHHHHHHHHHCCEEEEEEEEEHHHHHHHHHHCCCCCCCHHHCCCCHHHC
RPEALDQTALKESPLTQKL
CCCHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MVRLFIALTLDDSLRARLSGLEAGIPGARWAPAQNLHVTLRFLGETEEGLAREIDAALLS
CEEEEEEEEECHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHH
VRAEPFTLPIAGLGVFGGERRPRLLWAGVEKTPALTLLKGRIDAALRGLGVGPDEHVYSP
HCCCCEEEEEEECEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCEECC
HISLARLKTPDPERLRRFVEANNLSVRGSLTVTSFSLFSSLLTGEGPLYREEAVYPLAAY
CCEEEEECCCCHHHHHHHHHHCCEEEEEEEEEHHHHHHHHHHCCCCCCCHHHCCCCHHHC
RPEALDQTALKESPLTQKL
CCCHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]