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The map label for this gene is yggS [C]

Identifier: 83594963

GI number: 83594963

Start: 4175262

End: 4175990

Strand: Direct

Name: yggS [C]

Synonym: Rru_A3634

Alternate gene names: 83594963

Gene position: 4175262-4175990 (Clockwise)

Preceding gene: 83594957

Following gene: 83594967

Centisome position: 95.92

GC content: 68.18

Gene sequence:

>729_bases
ATGGACTGTGAGATGATCGAACCGCTTCCCGCCCCCTGTCTCGACGTGGTCGAAAACCTGCGCGCCGTGCGCGGCGCCAT
CGCCGACGCCTGCAAGCCGGTGGGCCGCGACGCCGCCGGGGTCGCCCTGGTCGCCGTCAGCAAGAACAACGGGCCCGAAC
GGGTGCGCGCCGCCCTGCGCGCCGGCCACCGCTTGTTCGGCGAGAACCGGGTTCAGGAGGCCCAGGGCAAATGGCCGGCC
TTCAAGGCCGATCACGCCGATATCGATCTGCATCTGATCGGGCCCTTGCAAACCAACAAGGTGCGCGAGGCCGTTGCGCT
GTTTGACGCCATCGATTCGGTCGATCGCCCGCGCCTCGCCCGCGCCCTGGCCGAGGAGATGGACCATCAGGGACGGCGCC
TGCCGGTGCTCATCCAGGTCAATACGGGTGAGGAGCCGCAGAAAGCCGGGATCCTGCCGCGCGACGCCGATGGTTTTTTG
CGTGAATGCCGCGAGGATTTGGGGCTCGATGTGCGCGGCTTGATGTGCATTCCCCCGGTCGACGACGAACCGTCTCCCCA
TTTCGCCCTGCTGCGCGAAATCGCCCGCCGTCACGGGCTGGGGGTGCTGAGCATGGGGATGAGCGCCGATTACGGGGTGG
CCGTGGCCTTTGGCGCTACCCATGTGCGCCTGGGAACGGCGATTTTCGGCGACCGCCGCGCCCTGCTCGGCACGCCGATC
GGGGGTTAG

Upstream 100 bases:

>100_bases
AGCTTACCCCCGCGCGCCCCCGGCCGCACCCGTTATGCGCGGAATGGCGGCCGGGAGCGGCGCGAAAGCGTCCTCGCCCG
CCGGGACCCCACCGCCGCGA

Downstream 100 bases:

>100_bases
GGGCTGATCTCGATCTCGGCGTTTTCGTCGCAGAGCGCCAGCACGCGGCGCAGGTCGGCGACGGCCAGGGCGACGCAGCC
GGCGGTGGGCCGGCCATCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MDCEMIEPLPAPCLDVVENLRAVRGAIADACKPVGRDAAGVALVAVSKNNGPERVRAALRAGHRLFGENRVQEAQGKWPA
FKADHADIDLHLIGPLQTNKVREAVALFDAIDSVDRPRLARALAEEMDHQGRRLPVLIQVNTGEEPQKAGILPRDADGFL
RECREDLGLDVRGLMCIPPVDDEPSPHFALLREIARRHGLGVLSMGMSADYGVAVAFGATHVRLGTAIFGDRRALLGTPI
GG

Sequences:

>Translated_242_residues
MDCEMIEPLPAPCLDVVENLRAVRGAIADACKPVGRDAAGVALVAVSKNNGPERVRAALRAGHRLFGENRVQEAQGKWPA
FKADHADIDLHLIGPLQTNKVREAVALFDAIDSVDRPRLARALAEEMDHQGRRLPVLIQVNTGEEPQKAGILPRDADGFL
RECREDLGLDVRGLMCIPPVDDEPSPHFALLREIARRHGLGVLSMGMSADYGVAVAFGATHVRLGTAIFGDRRALLGTPI
GG
>Mature_242_residues
MDCEMIEPLPAPCLDVVENLRAVRGAIADACKPVGRDAAGVALVAVSKNNGPERVRAALRAGHRLFGENRVQEAQGKWPA
FKADHADIDLHLIGPLQTNKVREAVALFDAIDSVDRPRLARALAEEMDHQGRRLPVLIQVNTGEEPQKAGILPRDADGFL
RECREDLGLDVRGLMCIPPVDDEPSPHFALLREIARRHGLGVLSMGMSADYGVAVAFGATHVRLGTAIFGDRRALLGTPI
GG

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=234, Percent_Identity=33.3333333333333, Blast_Score=97, Evalue=1e-20,
Organism=Escherichia coli, GI1789321, Length=227, Percent_Identity=37.8854625550661, Blast_Score=126, Evalue=1e-30,
Organism=Caenorhabditis elegans, GI17533025, Length=248, Percent_Identity=31.4516129032258, Blast_Score=96, Evalue=2e-20,
Organism=Saccharomyces cerevisiae, GI6319435, Length=236, Percent_Identity=33.8983050847458, Blast_Score=84, Evalue=3e-17,
Organism=Drosophila melanogaster, GI45550861, Length=224, Percent_Identity=36.1607142857143, Blast_Score=104, Evalue=4e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 26063; Mature: 26063

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDCEMIEPLPAPCLDVVENLRAVRGAIADACKPVGRDAAGVALVAVSKNNGPERVRAALR
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHH
AGHRLFGENRVQEAQGKWPAFKADHADIDLHLIGPLQTNKVREAVALFDAIDSVDRPRLA
HHHHHHCCHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCHHHH
RALAEEMDHQGRRLPVLIQVNTGEEPQKAGILPRDADGFLRECREDLGLDVRGLMCIPPV
HHHHHHHHHCCCCCEEEEEECCCCCHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCC
DDEPSPHFALLREIARRHGLGVLSMGMSADYGVAVAFGATHVRLGTAIFGDRRALLGTPI
CCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEECCHHHHHHHHHHCCCHHCCCCCC
GG
CC
>Mature Secondary Structure
MDCEMIEPLPAPCLDVVENLRAVRGAIADACKPVGRDAAGVALVAVSKNNGPERVRAALR
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHH
AGHRLFGENRVQEAQGKWPAFKADHADIDLHLIGPLQTNKVREAVALFDAIDSVDRPRLA
HHHHHHCCHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCHHHH
RALAEEMDHQGRRLPVLIQVNTGEEPQKAGILPRDADGFLRECREDLGLDVRGLMCIPPV
HHHHHHHHHCCCCCEEEEEECCCCCHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCC
DDEPSPHFALLREIARRHGLGVLSMGMSADYGVAVAFGATHVRLGTAIFGDRRALLGTPI
CCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEECCHHHHHHHHHHCCCHHCCCCCC
GG
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]