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The map label for this gene is ycbZ [H]

Identifier: 83594912

GI number: 83594912

Start: 4125543

End: 4127525

Strand: Direct

Name: ycbZ [H]

Synonym: Rru_A3583

Alternate gene names: 83594912

Gene position: 4125543-4127525 (Clockwise)

Preceding gene: 83594911

Following gene: 83594917

Centisome position: 94.78

GC content: 70.85

Gene sequence:

>1983_bases
ATGACCGTTTCCCCTCTTGGCGCCCCGGCTTTGCGCCGCCCCTGCGACCCCGCCGGCCTGCCCTTCGAAACCACCGCGGA
TCTGACCGCGCCCAAGGGTCCGCTTGGCCAGGAGCGGGCGCTCGAGGCGGTGGCCTTCGCCCTCGCCATGGCGGCGCCGG
GGTATAATCTGTTCTGCATGGGCCCCGAGGGCACGGGAAAGCGCGCCCTGACCGGCGCCCTGCTGGCCGAGGCGGCCCGC
CAAAAGCCCACCCCCGACGACTGGGTGATCCTGCACGATCCGGCCGATCCCCTGCGCCCGACCCCCTTGCGCCTGCCCGC
CGGGCGGGCCAAGGGGTTCCTTGCGGCCGTTGACGCCCTGGCCACCGATTGGACGGCCGAATGGAGCGCGCCTGCCGCCG
AAGACGGCGGCGCCGCCTTCGCCGATCTGCCCGATGTGGCGCCGCTCTTCGCCCGCCTCAGTCAGGACAGCGCCACCGGC
AAGATCTGGCGGGCCGAAGCTTTGGTCAGCCACGCGCCCGGCGCGGGCGCGCCGATCATTCGCGAGGATAACCCGACGCG
GGCCGCCCTTTCGGGATGGGTGGAACATGTGGCCGCCCCCGGCGCGCCGGTGGTCAGCCTGATCCGCCCGGGCGCCCTGC
AGCGGGCCAATGGCGGCTTTCTACTGCTCGATGCCCATAAGGTGCTGACGACGCCGGGCGCCTGGGAAGACCTCAAGCAC
AGCCTGCGTCACGGCCAGATCCGCGTTGTCACCGAAGCCGAGCGCGCCTTGGGCGCCGTGGCGGCGCCGACGCCCGAGCC
TTCGCCCCTGCCGCTCGCCCTCAAGGTCGTGCTGTTTGGCGAGCCCGATCTCTACTATGACCTGTGGGACAGCGACCCCG
AATTCGCCGCCCTGTTCAAGGTCGCCGCCGATTTCGACGACCAGATGAAGCGCACCCCCGAAGCGGTGCTGGGCTTGGCG
CGGGTTCTGGCCGAGGGCGGTCGCGCCGAGGACCTGCCGCCGCTTGATCGCGGCGCCGTCGCCCGCATCGTCGATCGCGC
CGTGCGTCTGGCTGAGGATACGGACAAGCTGACCGCGCGCATGGAGCCGCTGATCGATTTGGCGCGCGAGGCCGGGTTCT
TCGCCCGCCAAGACGGCGCCGGGGTGATCGGCCGCGACCATGTGGAGCGCGCCCTGACCGCCCAGGAACGCCGCGAGGGC
CGGGTCCGCGACCTGCTGCTCGAAGAGATCCTCGACGGCACCATCCGCGTCGAGACCACCGGCGCGGTGGTCGGCCAGAT
CAACGGGCTGGCCGTGCTCGATTACGGCCGCGCCAGCTTCGGCCGGCCCAGCCGCATCACCTGCGCCGTGCGCGTCGGCC
GCGGCGAGGTCACCGATATCGAGCGCGAGGTCGATCTGGGCGGGCCGCTGCACAGCAAGGGGGTGCTGATCCTGTCGGCC
TTCCTGTCGACGCGCTTTTCGGTCGACGGCCTGCTCAATCTGGCGGCCAGTCTGGTCTTCGAGCAATCCTATTGCGAGGT
CGACGGCGATTCGGCCTCGTCGCCCGAGCTTTACGCCCTGCTTTCGGCCCTGGCCGAGGCGCCGATCCGCCAGTCGCTGG
CGGTGACCGGCTCGGTCGACCAGTTCGGCAATATCCAGCCGATCGGCGGCGTGAATGAAAAGATCGAGGGCTTTTTCGAG
GTCTGCGCGGCGCGTGGCCTGACCGGCGATCAGGGCGTGCTGATTCCGCGCGCCAATCTGCGCAATCTGATGCTGCGCGA
CGAGGTGGTCGAGGCCTGCGACACAGGCCTTTTCCACGTTTATCCGATCGCCACCGTCGACGAGGGCATCGCCATCCTGA
CCGGGCTGATCCCGGGCGAGCGCGGCCGCGACGGCGGCTTCCCCGAGGGCTCGCTTAATCGCCGGGTCGCCCGCCGCCTG
GAAAGCTTCGCGCGGCGCTCGCGCGAGACCTTCGATGGTCCGCCGCGACGCGGCCGACCGTAA

Upstream 100 bases:

>100_bases
CCGACCCGGATATGGAAGCCCTCGATGCGCAGGACGACTAAATGACTGGGCGGTGATAGGGTCACCTCCCTTTTCCTTAT
TTCAGGATCAGCAGCCTTCC

Downstream 100 bases:

>100_bases
GCGGCCCGTTATTTCACTCAGGGCTCGGGCGGAGCGCCGACCGTTTCCTCGGCGATTTCGCCCGTCACCTGCTGGGCCTC
GCGCTGAAGCTTGCGGAACG

Product: ATP-dependent protease-like

Products: NA

Alternate protein names: ATP-dependent protease La homolog [H]

Number of amino acids: Translated: 660; Mature: 659

Protein sequence:

>660_residues
MTVSPLGAPALRRPCDPAGLPFETTADLTAPKGPLGQERALEAVAFALAMAAPGYNLFCMGPEGTGKRALTGALLAEAAR
QKPTPDDWVILHDPADPLRPTPLRLPAGRAKGFLAAVDALATDWTAEWSAPAAEDGGAAFADLPDVAPLFARLSQDSATG
KIWRAEALVSHAPGAGAPIIREDNPTRAALSGWVEHVAAPGAPVVSLIRPGALQRANGGFLLLDAHKVLTTPGAWEDLKH
SLRHGQIRVVTEAERALGAVAAPTPEPSPLPLALKVVLFGEPDLYYDLWDSDPEFAALFKVAADFDDQMKRTPEAVLGLA
RVLAEGGRAEDLPPLDRGAVARIVDRAVRLAEDTDKLTARMEPLIDLAREAGFFARQDGAGVIGRDHVERALTAQERREG
RVRDLLLEEILDGTIRVETTGAVVGQINGLAVLDYGRASFGRPSRITCAVRVGRGEVTDIEREVDLGGPLHSKGVLILSA
FLSTRFSVDGLLNLAASLVFEQSYCEVDGDSASSPELYALLSALAEAPIRQSLAVTGSVDQFGNIQPIGGVNEKIEGFFE
VCAARGLTGDQGVLIPRANLRNLMLRDEVVEACDTGLFHVYPIATVDEGIAILTGLIPGERGRDGGFPEGSLNRRVARRL
ESFARRSRETFDGPPRRGRP

Sequences:

>Translated_660_residues
MTVSPLGAPALRRPCDPAGLPFETTADLTAPKGPLGQERALEAVAFALAMAAPGYNLFCMGPEGTGKRALTGALLAEAAR
QKPTPDDWVILHDPADPLRPTPLRLPAGRAKGFLAAVDALATDWTAEWSAPAAEDGGAAFADLPDVAPLFARLSQDSATG
KIWRAEALVSHAPGAGAPIIREDNPTRAALSGWVEHVAAPGAPVVSLIRPGALQRANGGFLLLDAHKVLTTPGAWEDLKH
SLRHGQIRVVTEAERALGAVAAPTPEPSPLPLALKVVLFGEPDLYYDLWDSDPEFAALFKVAADFDDQMKRTPEAVLGLA
RVLAEGGRAEDLPPLDRGAVARIVDRAVRLAEDTDKLTARMEPLIDLAREAGFFARQDGAGVIGRDHVERALTAQERREG
RVRDLLLEEILDGTIRVETTGAVVGQINGLAVLDYGRASFGRPSRITCAVRVGRGEVTDIEREVDLGGPLHSKGVLILSA
FLSTRFSVDGLLNLAASLVFEQSYCEVDGDSASSPELYALLSALAEAPIRQSLAVTGSVDQFGNIQPIGGVNEKIEGFFE
VCAARGLTGDQGVLIPRANLRNLMLRDEVVEACDTGLFHVYPIATVDEGIAILTGLIPGERGRDGGFPEGSLNRRVARRL
ESFARRSRETFDGPPRRGRP
>Mature_659_residues
TVSPLGAPALRRPCDPAGLPFETTADLTAPKGPLGQERALEAVAFALAMAAPGYNLFCMGPEGTGKRALTGALLAEAARQ
KPTPDDWVILHDPADPLRPTPLRLPAGRAKGFLAAVDALATDWTAEWSAPAAEDGGAAFADLPDVAPLFARLSQDSATGK
IWRAEALVSHAPGAGAPIIREDNPTRAALSGWVEHVAAPGAPVVSLIRPGALQRANGGFLLLDAHKVLTTPGAWEDLKHS
LRHGQIRVVTEAERALGAVAAPTPEPSPLPLALKVVLFGEPDLYYDLWDSDPEFAALFKVAADFDDQMKRTPEAVLGLAR
VLAEGGRAEDLPPLDRGAVARIVDRAVRLAEDTDKLTARMEPLIDLAREAGFFARQDGAGVIGRDHVERALTAQERREGR
VRDLLLEEILDGTIRVETTGAVVGQINGLAVLDYGRASFGRPSRITCAVRVGRGEVTDIEREVDLGGPLHSKGVLILSAF
LSTRFSVDGLLNLAASLVFEQSYCEVDGDSASSPELYALLSALAEAPIRQSLAVTGSVDQFGNIQPIGGVNEKIEGFFEV
CAARGLTGDQGVLIPRANLRNLMLRDEVVEACDTGLFHVYPIATVDEGIAILTGLIPGERGRDGGFPEGSLNRRVARRLE
SFARRSRETFDGPPRRGRP

Specific function: Unknown

COG id: COG1067

COG function: function code O; Predicted ATP-dependent protease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S16 family [H]

Homologues:

Organism=Escherichia coli, GI1787188, Length=453, Percent_Identity=36.4238410596026, Blast_Score=277, Evalue=2e-75,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008269
- InterPro:   IPR001984
- InterPro:   IPR020568 [H]

Pfam domain/function: PF05362 Lon_C [H]

EC number: 3.4.21.- [C]

Molecular weight: Translated: 70223; Mature: 70091

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVSPLGAPALRRPCDPAGLPFETTADLTAPKGPLGQERALEAVAFALAMAAPGYNLFCM
CCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
GPEGTGKRALTGALLAEAARQKPTPDDWVILHDPADPLRPTPLRLPAGRAKGFLAAVDAL
CCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH
ATDWTAEWSAPAAEDGGAAFADLPDVAPLFARLSQDSATGKIWRAEALVSHAPGAGAPII
HHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEHHHHHHHCCCCCCCCCE
REDNPTRAALSGWVEHVAAPGAPVVSLIRPGALQRANGGFLLLDAHKVLTTPGAWEDLKH
ECCCCHHHHHHHHHHHHCCCCCCHHHHHCCCCCEECCCCEEEEECHHHHCCCCCHHHHHH
SLRHGQIRVVTEAERALGAVAAPTPEPSPLPLALKVVLFGEPDLYYDLWDSDPEFAALFK
HHHCCCEEEEEHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCEEEECCCCCCHHHHHHH
VAADFDDQMKRTPEAVLGLARVLAEGGRAEDLPPLDRGAVARIVDRAVRLAEDTDKLTAR
HHHCHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
MEPLIDLAREAGFFARQDGAGVIGRDHVERALTAQERREGRVRDLLLEEILDGTIRVETT
HHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEEEEEC
GAVVGQINGLAVLDYGRASFGRPSRITCAVRVGRGEVTDIEREVDLGGPLHSKGVLILSA
CEEEECCCCEEEEECCCCCCCCCCEEEEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHH
FLSTRFSVDGLLNLAASLVFEQSYCEVDGDSASSPELYALLSALAEAPIRQSLAVTGSVD
HHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCHHHHHHEEECCHH
QFGNIQPIGGVNEKIEGFFEVCAARGLTGDQGVLIPRANLRNLMLRDEVVEACDTGLFHV
HCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCEEE
YPIATVDEGIAILTGLIPGERGRDGGFPEGSLNRRVARRLESFARRSRETFDGPPRRGRP
EECHHHHCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
TVSPLGAPALRRPCDPAGLPFETTADLTAPKGPLGQERALEAVAFALAMAAPGYNLFCM
CCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
GPEGTGKRALTGALLAEAARQKPTPDDWVILHDPADPLRPTPLRLPAGRAKGFLAAVDAL
CCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH
ATDWTAEWSAPAAEDGGAAFADLPDVAPLFARLSQDSATGKIWRAEALVSHAPGAGAPII
HHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEHHHHHHHCCCCCCCCCE
REDNPTRAALSGWVEHVAAPGAPVVSLIRPGALQRANGGFLLLDAHKVLTTPGAWEDLKH
ECCCCHHHHHHHHHHHHCCCCCCHHHHHCCCCCEECCCCEEEEECHHHHCCCCCHHHHHH
SLRHGQIRVVTEAERALGAVAAPTPEPSPLPLALKVVLFGEPDLYYDLWDSDPEFAALFK
HHHCCCEEEEEHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCEEEECCCCCCHHHHHHH
VAADFDDQMKRTPEAVLGLARVLAEGGRAEDLPPLDRGAVARIVDRAVRLAEDTDKLTAR
HHHCHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
MEPLIDLAREAGFFARQDGAGVIGRDHVERALTAQERREGRVRDLLLEEILDGTIRVETT
HHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEEEEEC
GAVVGQINGLAVLDYGRASFGRPSRITCAVRVGRGEVTDIEREVDLGGPLHSKGVLILSA
CEEEECCCCEEEEECCCCCCCCCCEEEEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHH
FLSTRFSVDGLLNLAASLVFEQSYCEVDGDSASSPELYALLSALAEAPIRQSLAVTGSVD
HHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCHHHHHHEEECCHH
QFGNIQPIGGVNEKIEGFFEVCAARGLTGDQGVLIPRANLRNLMLRDEVVEACDTGLFHV
HCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCEEE
YPIATVDEGIAILTGLIPGERGRDGGFPEGSLNRRVARRLESFARRSRETFDGPPRRGRP
EECHHHHCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]