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The map label for this gene is 83594894

Identifier: 83594894

GI number: 83594894

Start: 4108946

End: 4109704

Strand: Reverse

Name: 83594894

Synonym: Rru_A3565

Alternate gene names: NA

Gene position: 4109704-4108946 (Counterclockwise)

Preceding gene: 83594895

Following gene: 83594892

Centisome position: 94.41

GC content: 66.27

Gene sequence:

>759_bases
ATGCTGCCGCTGCACGATGATAATCCGACAACGATCAGGCCGGTGGTCACCATCGGCCTGATTGTTTTATGCCTCGCCGT
CTTCGTCTATCAGAGCGGTCTGCCGCCGCGGGCGGCGCGGGCCTTCGTGCTGATGTTCGGGGCGATTCCCGCCGATCTTT
TTCACGGCCTTGGCATCCCCCGGCCCTTCGACCTTCCGGCCTGGATCACGCTGTTGACCAGCATGACCCTGCATGGCGGC
TGGCAGCATCTGCTGGGCAACATGCTGTTCTTGTGGGTCTTTGGCAATAATGTCGAAGACGCCCTGGGTCATCTGCGCTT
TCTGGCGTTTTACGCGGTCTGCGGGCTGATCGCCGCCCTGACCCATGCGCTGATCGATAGTTCATCGACGGTGCCGATGG
TCGGTGCCTCGGGGGCAATCTCCGGGGTGATGGGTGCCTATATCCTGCTCCATCCGCGGGCGCGGGTATTGGTCTGGGCC
GTCGTCCTGCCCTTGCGCCTGCCCGCCGTCGTCCTGCTTGGCCTGTGGTTCCTGATGCAATTGGCCTCGGCCTTCGGCGC
GGCGGACCAAGGCGTGGCCTTTTGGGCCCATATCGGCGGCTTTATCGCCGGCATGGCGCTGCTGGTCCCCTTCCGCCGCC
GGGGGGTGGCGCTGTTCCAGCCTCTCCGCGCCGCCTTGCCGGCCAAACGCCGGCGCAGCCGCCTGCCGCCAAGCGGGTCG
CCGCCCCCCAAACCGCCGCGACGCGGTCCCTGGGGATAG

Upstream 100 bases:

>100_bases
GCTGATCGGCTTGGCTCCTCTCCCCTTCTCCCTTCCCCAAGGGAGAAGGGGACGCCCGCGGGTGATGGTTCCCTCCCCCT
AAGGGCAAGGAAACGGGCCG

Downstream 100 bases:

>100_bases
GCCGATGAGAACAAATCACCGAGCCCTCTGACCCAGAGGGCGACGGCGATTTGCGTGACGATCAGCATCTTAGAGCGGGG
GCCAGAGTCCCCGTTCACCG

Product: rhomboid-like protein

Products: NA

Alternate protein names: Integral Membrane Protein; Peptidase; Rhomboid-Like Protein; S54 Family Peptidase; Peptidase Protein; Rhomboid Family Transmembrane Protein; LOW QUALITY PROTEIN Integral Membrane Protein; Transmembrane Rhomboid Family Protein; Rhomboid-Family Protein; Subfamily; Rhomboid Serine Protease; Rhomboid Family Membrane Protein; Membrane Associated Serine Protease; Integral Membrane Rhomboid Family Protein; Regulatory Proteins IclR

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MLPLHDDNPTTIRPVVTIGLIVLCLAVFVYQSGLPPRAARAFVLMFGAIPADLFHGLGIPRPFDLPAWITLLTSMTLHGG
WQHLLGNMLFLWVFGNNVEDALGHLRFLAFYAVCGLIAALTHALIDSSSTVPMVGASGAISGVMGAYILLHPRARVLVWA
VVLPLRLPAVVLLGLWFLMQLASAFGAADQGVAFWAHIGGFIAGMALLVPFRRRGVALFQPLRAALPAKRRRSRLPPSGS
PPPKPPRRGPWG

Sequences:

>Translated_252_residues
MLPLHDDNPTTIRPVVTIGLIVLCLAVFVYQSGLPPRAARAFVLMFGAIPADLFHGLGIPRPFDLPAWITLLTSMTLHGG
WQHLLGNMLFLWVFGNNVEDALGHLRFLAFYAVCGLIAALTHALIDSSSTVPMVGASGAISGVMGAYILLHPRARVLVWA
VVLPLRLPAVVLLGLWFLMQLASAFGAADQGVAFWAHIGGFIAGMALLVPFRRRGVALFQPLRAALPAKRRRSRLPPSGS
PPPKPPRRGPWG
>Mature_252_residues
MLPLHDDNPTTIRPVVTIGLIVLCLAVFVYQSGLPPRAARAFVLMFGAIPADLFHGLGIPRPFDLPAWITLLTSMTLHGG
WQHLLGNMLFLWVFGNNVEDALGHLRFLAFYAVCGLIAALTHALIDSSSTVPMVGASGAISGVMGAYILLHPRARVLVWA
VVLPLRLPAVVLLGLWFLMQLASAFGAADQGVAFWAHIGGFIAGMALLVPFRRRGVALFQPLRAALPAKRRRSRLPPSGS
PPPKPPRRGPWG

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27165; Mature: 27165

Theoretical pI: Translated: 11.98; Mature: 11.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCCCCCCCC
>Mature Secondary Structure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CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA