Click here to switch to the map view.

The map label for this gene is rcoM2 [H]

Identifier: 83594844

GI number: 83594844

Start: 4048032

End: 4048742

Strand: Direct

Name: rcoM2 [H]

Synonym: Rru_A3515

Alternate gene names: 83594844

Gene position: 4048032-4048742 (Clockwise)

Preceding gene: 83594843

Following gene: 83594845

Centisome position: 93.0

GC content: 69.48

Gene sequence:

>711_bases
ATGGACGATTTTGCCTATAACTTGCGCCGGGCCGAAACCGGGGTTCTGCTGCTCGCCGATGATCTGACGGTCACGGCGGT
ATCGCCGGGCGCCTTGAGCCTGCTTGGCCTCGACAAGCCCGGGGCGCTGCTCGGCCGGCCGATCCTTGATCTCCATCCGC
CACCGCTGCGCCCCAAGGTGGCGGTGCTGCTCAAAACCGCGCGCGGCCCCTCCGGCCCGGCGGCGACGGCGGTGCTGTCG
CTGCGCGGCGGCCCGGTGCTGATCCGCGCCAGCGCCCTGACCGGCCAGGGCGAAACCGCCTTCGCCCTGGTGCTGACGGC
GGTCGGCGAGAGCCGCGAGACCAAAGAGGGGCCAAGCGCGCGGCCGGCCCCGCCGGGGTATCTGCGCAAGGTGCCGCTGG
GCCTGGGCGAGACCACCGAATTCGTCGATACGGCCGGCGTGATTTACCTTGAGGCCGATGGCCATTACAGCAGGGTCCAC
ACCGCTTTTGGCCATAGCTTCTGTCCGCTGGCCCTGGCCGAGCTTGAGCGCCGCCTGGATCCCGACCAGTTCCTGCGCGT
CCATCGCTCCTATATCGTCGCCCTTGCCCATGTCCGCGCCTTCCGCAAGCGCGAGAGCGGCGGGCTGCTGGTGATGGATA
CGGGTGCTGGCGATCTGGTGCCAATCGGCCGCGCCCAGGTCACCAGACTGCGCGGCCTTCTGGCCATCTAG

Upstream 100 bases:

>100_bases
TGACCGACGACCAAGGGGAAAGAACCGTCCCCCTGGAGGTCGACACCGGCATCGCCGCCTCGTGGGCCGAGGCCCATTAA
TCACCCGGGGCGGAGGGGCG

Downstream 100 bases:

>100_bases
GGCCCGCAGACCACCCTTCACGCAAAACGGCGGCGGTTGGTGAATGGCCGCTGACGGCGGCGGGGAGGATGGTCATTCTC
ATCCTCGCACCCAGTTTCTC

Product: LytR/AlgR family transcriptional regulator

Products: NA

Alternate protein names: Regulator of CO metabolism 2; RCOM-2 [H]

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MDDFAYNLRRAETGVLLLADDLTVTAVSPGALSLLGLDKPGALLGRPILDLHPPPLRPKVAVLLKTARGPSGPAATAVLS
LRGGPVLIRASALTGQGETAFALVLTAVGESRETKEGPSARPAPPGYLRKVPLGLGETTEFVDTAGVIYLEADGHYSRVH
TAFGHSFCPLALAELERRLDPDQFLRVHRSYIVALAHVRAFRKRESGGLLVMDTGAGDLVPIGRAQVTRLRGLLAI

Sequences:

>Translated_236_residues
MDDFAYNLRRAETGVLLLADDLTVTAVSPGALSLLGLDKPGALLGRPILDLHPPPLRPKVAVLLKTARGPSGPAATAVLS
LRGGPVLIRASALTGQGETAFALVLTAVGESRETKEGPSARPAPPGYLRKVPLGLGETTEFVDTAGVIYLEADGHYSRVH
TAFGHSFCPLALAELERRLDPDQFLRVHRSYIVALAHVRAFRKRESGGLLVMDTGAGDLVPIGRAQVTRLRGLLAI
>Mature_236_residues
MDDFAYNLRRAETGVLLLADDLTVTAVSPGALSLLGLDKPGALLGRPILDLHPPPLRPKVAVLLKTARGPSGPAATAVLS
LRGGPVLIRASALTGQGETAFALVLTAVGESRETKEGPSARPAPPGYLRKVPLGLGETTEFVDTAGVIYLEADGHYSRVH
TAFGHSFCPLALAELERRLDPDQFLRVHRSYIVALAHVRAFRKRESGGLLVMDTGAGDLVPIGRAQVTRLRGLLAI

Specific function: One-component, b-type heme-containing aerobic sensor and transcriptional regulator that responds to CO by activating the expression of the oxidation operon cox [H]

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007492 [H]

Pfam domain/function: PF04397 LytTR [H]

EC number: NA

Molecular weight: Translated: 24974; Mature: 24974

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDFAYNLRRAETGVLLLADDLTVTAVSPGALSLLGLDKPGALLGRPILDLHPPPLRPKV
CCCHHHHHHHCCCCEEEEECCEEEEEECCCCEEEEECCCCCHHHCCCCCCCCCCCCCCCE
AVLLKTARGPSGPAATAVLSLRGGPVLIRASALTGQGETAFALVLTAVGESRETKEGPSA
EEEEEECCCCCCCCEEEEEEECCCEEEEEEEEECCCCCHHEEEEEEHHCCCCCCCCCCCC
RPAPPGYLRKVPLGLGETTEFVDTAGVIYLEADGHYSRVHTAFGHSFCPLALAELERRLD
CCCCCCHHEECCCCCCCCHHHHCCCCEEEEECCCCHHHHHHHHCCCCCHHHHHHHHHCCC
PDQFLRVHRSYIVALAHVRAFRKRESGGLLVMDTGAGDLVPIGRAQVTRLRGLLAI
HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEECCHHHHHHHHHHHCC
>Mature Secondary Structure
MDDFAYNLRRAETGVLLLADDLTVTAVSPGALSLLGLDKPGALLGRPILDLHPPPLRPKV
CCCHHHHHHHCCCCEEEEECCEEEEEECCCCEEEEECCCCCHHHCCCCCCCCCCCCCCCE
AVLLKTARGPSGPAATAVLSLRGGPVLIRASALTGQGETAFALVLTAVGESRETKEGPSA
EEEEEECCCCCCCCEEEEEEECCCEEEEEEEEECCCCCHHEEEEEEHHCCCCCCCCCCCC
RPAPPGYLRKVPLGLGETTEFVDTAGVIYLEADGHYSRVHTAFGHSFCPLALAELERRLD
CCCCCCHHEECCCCCCCCHHHHCCCCEEEEECCCCHHHHHHHHCCCCCHHHHHHHHHCCC
PDQFLRVHRSYIVALAHVRAFRKRESGGLLVMDTGAGDLVPIGRAQVTRLRGLLAI
HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEECCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA