| Definition | Rhodospirillum rubrum ATCC 11170 chromosome, complete genome. |
|---|---|
| Accession | NC_007643 |
| Length | 4,352,825 |
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The map label for this gene is livF [H]
Identifier: 83594834
GI number: 83594834
Start: 4032304
End: 4033149
Strand: Reverse
Name: livF [H]
Synonym: Rru_A3505
Alternate gene names: 83594834
Gene position: 4033149-4032304 (Counterclockwise)
Preceding gene: 83594835
Following gene: 83594833
Centisome position: 92.66
GC content: 62.17
Gene sequence:
>846_bases ATGGGTGATGCGACGGCGGCCTTGCCGGGTGAGCCGCTTGCTTCCGCGGCCGAGCCGATTCTGTCGGTCAATAACATCGA GGTGGTCTACGACGACGTCATCTTGGTGCTGCGCGGCGTCAGCCTTGATGTTCCGGCCGGCGGGATCGTCACCCTGCTTG GCCCCAATGGCGCGGGCAAATCAACCACCCTCAAGGCGATCTCGGGATTGCTGCGCACCGAAAACGGTTTGGTGACGCGC GGCGAGGTCCGCTTCATGGGCGAGGTCATCACCAACCTCGATCCCGAAAAGATCGTGCGCCGGGGCATCTTCCAGGTGAT GGAGGGGCGCCGGATCATCGAGGATATGACGGTGATCGAAAACCTGCGGCTGGGCGCCTTCACCCGCCGCGACGGGGCGC CCGCCGTGCGTCGTGATCTGGAGATGGTGCTTGATTACTTCCCGCGCCTGCGCGAACGCACCGGGCTTGCCGGTTATCTT TCGGGGGGTGAACAGCAGATGCTGGCGATCGGCCGGGCGATGATGGCGCGCCCCAAGTTGATACTGCTTGATGAGCCCTC GATGGGGCTGTCGCCGCTGCTGGTCAAAGAGGTGTTCTCGATCATCCGCAGCCTCAATCAGGCCCTGGGCATCACCTTGC TGGTCGTCGAACAAAACGCCCGCATGGCGCTGGGGGCGGCCTCTTACGGCTATATCCTTGAATCGGGCAAGGTCGTGCTT GACGGCCCGGCCGATCAGATGATGTCCAACGAGGACGTCAAGGAATTCTACCTTGGCGGCGGCGGCGACCACCGCAAGTC TTTCAAGAACCTGAAATCCTACAAACGCCGCAAGCGTTGGTTATAA
Upstream 100 bases:
>100_bases GCGCGACGACTGGCTGGGTTATTAGAAACAACGGCCGCGACCCGGCGGGGGCGCTTTTATCCCCCGCCGGCCTCCCCCGC TTGGCGACGAGGAGACGATC
Downstream 100 bases:
>100_bases TGGTGTTTCCCTATCGCCTTCCCTCTCGCCAAAAGGAGTGGCCATGGTTCGCTTCTTCGACGCCCTGGAAACCCGTGAGC CCGAGGTCAGGGACCGCGAG
Product: ABC transporter protein
Products: ADP; phosphate; L-leucine [Cytoplasm]; ADP; L-valine [Cytoplasm]; L-iso-leucine [Cytoplasm] [C]
Alternate protein names: LIV-I protein F [H]
Number of amino acids: Translated: 281; Mature: 280
Protein sequence:
>281_residues MGDATAALPGEPLASAAEPILSVNNIEVVYDDVILVLRGVSLDVPAGGIVTLLGPNGAGKSTTLKAISGLLRTENGLVTR GEVRFMGEVITNLDPEKIVRRGIFQVMEGRRIIEDMTVIENLRLGAFTRRDGAPAVRRDLEMVLDYFPRLRERTGLAGYL SGGEQQMLAIGRAMMARPKLILLDEPSMGLSPLLVKEVFSIIRSLNQALGITLLVVEQNARMALGAASYGYILESGKVVL DGPADQMMSNEDVKEFYLGGGGDHRKSFKNLKSYKRRKRWL
Sequences:
>Translated_281_residues MGDATAALPGEPLASAAEPILSVNNIEVVYDDVILVLRGVSLDVPAGGIVTLLGPNGAGKSTTLKAISGLLRTENGLVTR GEVRFMGEVITNLDPEKIVRRGIFQVMEGRRIIEDMTVIENLRLGAFTRRDGAPAVRRDLEMVLDYFPRLRERTGLAGYL SGGEQQMLAIGRAMMARPKLILLDEPSMGLSPLLVKEVFSIIRSLNQALGITLLVVEQNARMALGAASYGYILESGKVVL DGPADQMMSNEDVKEFYLGGGGDHRKSFKNLKSYKRRKRWL >Mature_280_residues GDATAALPGEPLASAAEPILSVNNIEVVYDDVILVLRGVSLDVPAGGIVTLLGPNGAGKSTTLKAISGLLRTENGLVTRG EVRFMGEVITNLDPEKIVRRGIFQVMEGRRIIEDMTVIENLRLGAFTRRDGAPAVRRDLEMVLDYFPRLRERTGLAGYLS GGEQQMLAIGRAMMARPKLILLDEPSMGLSPLLVKEVFSIIRSLNQALGITLLVVEQNARMALGAASYGYILESGKVVLD GPADQMMSNEDVKEFYLGGGGDHRKSFKNLKSYKRRKRWL
Specific function: Component of the leucine-specific transport system [H]
COG id: COG0410
COG function: function code E; ABC-type branched-chain amino acid transport systems, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI153792144, Length=167, Percent_Identity=29.3413173652695, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI27477115, Length=174, Percent_Identity=31.6091954022989, Blast_Score=75, Evalue=7e-14, Organism=Homo sapiens, GI45446740, Length=184, Percent_Identity=26.0869565217391, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI47078218, Length=184, Percent_Identity=26.0869565217391, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI148612844, Length=232, Percent_Identity=27.1551724137931, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI255708477, Length=232, Percent_Identity=27.1551724137931, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI27436953, Length=169, Percent_Identity=31.3609467455621, Blast_Score=71, Evalue=9e-13, Organism=Homo sapiens, GI27262624, Length=208, Percent_Identity=25.9615384615385, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI27262626, Length=208, Percent_Identity=25.9615384615385, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI215820660, Length=230, Percent_Identity=24.7826086956522, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI20143975, Length=230, Percent_Identity=24.7826086956522, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI11967969, Length=229, Percent_Identity=27.5109170305677, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI46592964, Length=210, Percent_Identity=25.7142857142857, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI46592956, Length=210, Percent_Identity=25.7142857142857, Blast_Score=66, Evalue=4e-11, Organism=Homo sapiens, GI46592978, Length=210, Percent_Identity=25.7142857142857, Blast_Score=66, Evalue=4e-11, Organism=Homo sapiens, GI46592915, Length=210, Percent_Identity=25.7142857142857, Blast_Score=66, Evalue=4e-11, Organism=Homo sapiens, GI46592971, Length=210, Percent_Identity=25.7142857142857, Blast_Score=66, Evalue=4e-11, Organism=Homo sapiens, GI46592898, Length=210, Percent_Identity=25.7142857142857, Blast_Score=66, Evalue=5e-11, Organism=Homo sapiens, GI21536376, Length=199, Percent_Identity=29.1457286432161, Blast_Score=66, Evalue=5e-11, Organism=Homo sapiens, GI171184400, Length=246, Percent_Identity=26.4227642276423, Blast_Score=65, Evalue=7e-11, Organism=Escherichia coli, GI87082268, Length=243, Percent_Identity=44.8559670781893, Blast_Score=184, Evalue=8e-48, Organism=Escherichia coli, GI1789864, Length=258, Percent_Identity=30.6201550387597, Blast_Score=125, Evalue=4e-30, Organism=Escherichia coli, GI1789593, Length=226, Percent_Identity=33.1858407079646, Blast_Score=106, Evalue=2e-24, Organism=Escherichia coli, GI1789672, Length=241, Percent_Identity=28.6307053941909, Blast_Score=101, Evalue=7e-23, Organism=Escherichia coli, GI1788225, Length=231, Percent_Identity=32.034632034632, Blast_Score=98, Evalue=8e-22, Organism=Escherichia coli, GI1788761, Length=217, Percent_Identity=29.9539170506912, Blast_Score=95, Evalue=5e-21, Organism=Escherichia coli, GI1786872, Length=209, Percent_Identity=32.0574162679426, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1790544, Length=239, Percent_Identity=30.5439330543933, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1787370, Length=251, Percent_Identity=29.8804780876494, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1789586, Length=240, Percent_Identity=30.8333333333333, Blast_Score=92, Evalue=5e-20, Organism=Escherichia coli, GI1787029, Length=219, Percent_Identity=29.6803652968037, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1788897, Length=244, Percent_Identity=29.5081967213115, Blast_Score=88, Evalue=6e-19, Organism=Escherichia coli, GI1787089, Length=215, Percent_Identity=32.093023255814, Blast_Score=88, Evalue=6e-19, Organism=Escherichia coli, GI1786398, Length=236, Percent_Identity=25.8474576271186, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1787712, Length=233, Percent_Identity=27.8969957081545, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1786703, Length=213, Percent_Identity=29.5774647887324, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI87081709, Length=216, Percent_Identity=29.6296296296296, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI1790467, Length=246, Percent_Identity=28.8617886178862, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1789873, Length=185, Percent_Identity=30.2702702702703, Blast_Score=81, Evalue=6e-17, Organism=Escherichia coli, GI1788506, Length=262, Percent_Identity=27.8625954198473, Blast_Score=81, Evalue=8e-17, Organism=Escherichia coli, GI87081782, Length=168, Percent_Identity=33.3333333333333, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1788450, Length=225, Percent_Identity=29.3333333333333, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1786253, Length=247, Percent_Identity=28.7449392712551, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI87082267, Length=221, Percent_Identity=28.0542986425339, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1787164, Length=230, Percent_Identity=30, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1788210, Length=207, Percent_Identity=31.8840579710145, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1790162, Length=250, Percent_Identity=23.6, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1790190, Length=212, Percent_Identity=28.7735849056604, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1787105, Length=241, Percent_Identity=30.2904564315353, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1788644, Length=228, Percent_Identity=29.3859649122807, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1789991, Length=248, Percent_Identity=26.6129032258064, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI87081834, Length=196, Percent_Identity=29.5918367346939, Blast_Score=74, Evalue=8e-15, Organism=Escherichia coli, GI1786803, Length=226, Percent_Identity=26.5486725663717, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1788165, Length=209, Percent_Identity=30.1435406698565, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1788472, Length=201, Percent_Identity=28.8557213930348, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI48994943, Length=188, Percent_Identity=31.3829787234043, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI87081791, Length=254, Percent_Identity=27.5590551181102, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1790525, Length=239, Percent_Identity=27.6150627615063, Blast_Score=71, Evalue=6e-14, Organism=Escherichia coli, GI1787792, Length=238, Percent_Identity=24.3697478991597, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1789962, Length=259, Percent_Identity=24.7104247104247, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI48995001, Length=207, Percent_Identity=28.9855072463768, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1787759, Length=242, Percent_Identity=28.5123966942149, Blast_Score=67, Evalue=9e-13, Organism=Escherichia coli, GI1786345, Length=232, Percent_Identity=27.5862068965517, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI145693107, Length=253, Percent_Identity=26.8774703557312, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1787758, Length=221, Percent_Identity=23.5294117647059, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI48994997, Length=251, Percent_Identity=27.0916334661355, Blast_Score=65, Evalue=7e-12, Organism=Escherichia coli, GI1789032, Length=238, Percent_Identity=25.6302521008403, Blast_Score=64, Evalue=8e-12, Organism=Escherichia coli, GI1786981, Length=203, Percent_Identity=33.4975369458128, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1786654, Length=241, Percent_Identity=26.1410788381743, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI1786563, Length=207, Percent_Identity=26.5700483091787, Blast_Score=61, Evalue=7e-11, Organism=Caenorhabditis elegans, GI17510237, Length=236, Percent_Identity=28.3898305084746, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI193209708, Length=222, Percent_Identity=28.3783783783784, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI71983516, Length=206, Percent_Identity=27.6699029126214, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71983510, Length=206, Percent_Identity=27.6699029126214, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71984940, Length=219, Percent_Identity=29.2237442922374, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI212646699, Length=225, Percent_Identity=26.2222222222222, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17541710, Length=230, Percent_Identity=28.2608695652174, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI71983523, Length=239, Percent_Identity=26.7782426778243, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI71996809, Length=226, Percent_Identity=26.5486725663717, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI25146777, Length=221, Percent_Identity=26.2443438914027, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI193211015, Length=226, Percent_Identity=26.5486725663717, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI193211017, Length=226, Percent_Identity=26.5486725663717, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI193202349, Length=229, Percent_Identity=25.764192139738, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI86563255, Length=258, Percent_Identity=26.3565891472868, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17569143, Length=241, Percent_Identity=27.3858921161826, Blast_Score=64, Evalue=1e-10, Organism=Saccharomyces cerevisiae, GI6322177, Length=192, Percent_Identity=31.25, Blast_Score=75, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6322980, Length=225, Percent_Identity=26.2222222222222, Blast_Score=66, Evalue=6e-12, Organism=Drosophila melanogaster, GI21357907, Length=187, Percent_Identity=33.1550802139037, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI28571209, Length=262, Percent_Identity=23.6641221374046, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI85726357, Length=227, Percent_Identity=26.431718061674, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI281363262, Length=235, Percent_Identity=27.6595744680851, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI24653245, Length=235, Percent_Identity=27.6595744680851, Blast_Score=65, Evalue=7e-11, Organism=Drosophila melanogaster, GI85724864, Length=218, Percent_Identity=24.3119266055046, Blast_Score=64, Evalue=9e-11, Organism=Drosophila melanogaster, GI24580555, Length=218, Percent_Identity=24.3119266055046, Blast_Score=64, Evalue=9e-11, Organism=Drosophila melanogaster, GI24650853, Length=228, Percent_Identity=25.8771929824561, Blast_Score=64, Evalue=1e-10, Organism=Drosophila melanogaster, GI85816269, Length=218, Percent_Identity=24.3119266055046, Blast_Score=64, Evalue=1e-10, Organism=Drosophila melanogaster, GI24580553, Length=218, Percent_Identity=24.3119266055046, Blast_Score=64, Evalue=1e-10,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 30656; Mature: 30525
Theoretical pI: Translated: 9.53; Mature: 9.53
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGDATAALPGEPLASAAEPILSVNNIEVVYDDVILVLRGVSLDVPAGGIVTLLGPNGAGK CCCCCCCCCCCCHHHHHHHHHCCCCEEEHHHHHHHHHHCCEEECCCCCEEEEECCCCCCC STTLKAISGLLRTENGLVTRGEVRFMGEVITNLDPEKIVRRGIFQVMEGRRIIEDMTVIE HHHHHHHHHHHHCCCCCEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHH NLRLGAFTRRDGAPAVRRDLEMVLDYFPRLRERTGLAGYLSGGEQQMLAIGRAMMARPKL HHHCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHCCCCE ILLDEPSMGLSPLLVKEVFSIIRSLNQALGITLLVVEQNARMALGAASYGYILESGKVVL EEEECCCCCCCHHHHHHHHHHHHHHHHHHCEEEEEEECCCCEEECCCHHCEEEECCCEEE DGPADQMMSNEDVKEFYLGGGGDHRKSFKNLKSYKRRKRWL ECCHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure GDATAALPGEPLASAAEPILSVNNIEVVYDDVILVLRGVSLDVPAGGIVTLLGPNGAGK CCCCCCCCCCCHHHHHHHHHCCCCEEEHHHHHHHHHHCCEEECCCCCEEEEECCCCCCC STTLKAISGLLRTENGLVTRGEVRFMGEVITNLDPEKIVRRGIFQVMEGRRIIEDMTVIE HHHHHHHHHHHHCCCCCEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHH NLRLGAFTRRDGAPAVRRDLEMVLDYFPRLRERTGLAGYLSGGEQQMLAIGRAMMARPKL HHHCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHCCCCE ILLDEPSMGLSPLLVKEVFSIIRSLNQALGITLLVVEQNARMALGAASYGYILESGKVVL EEEECCCCCCCHHHHHHHHHHHHHHHHHHCEEEEEEECCCCEEECCCHHCEEEECCCEEE DGPADQMMSNEDVKEFYLGGGGDHRKSFKNLKSYKRRKRWL ECCHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-leucine [Periplasm]; H2O; ATP; L-valine [Periplasm]; L-iso-leucine [Periplasm] [C]
Specific reaction: ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2195019; 8041620; 9278503 [H]