| Definition | Rhodospirillum rubrum ATCC 11170 chromosome, complete genome. |
|---|---|
| Accession | NC_007643 |
| Length | 4,352,825 |
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The map label for this gene is livF [H]
Identifier: 83594742
GI number: 83594742
Start: 3929649
End: 3930350
Strand: Reverse
Name: livF [H]
Synonym: Rru_A3413
Alternate gene names: 83594742
Gene position: 3930350-3929649 (Counterclockwise)
Preceding gene: 83594743
Following gene: 83594741
Centisome position: 90.29
GC content: 67.24
Gene sequence:
>702_bases ATGAGCGTTCTGGTCGTTGAGGGCATGGCGGCGGGCTATGGCGATGTCGATATCCTGTCCGATATCGCGCTGCGCGTCGA TCCGCTGGAGATCGTCACCATCGCCGGCACCAATGGCGCGGGCAAGTCGACCCTGGTCAAGGGGTTGATGGGCCTGCTCA CCCGCATCCGGGGCAAGGTGGAGTTCGAAGGAACCTCGCTGCTGGGCGTCGCCGCCGAACGGCGTATCCACCTGGGTATT TCCTATGTGCCCCAGGTCAACAACGTCTTCCCGTCGCTGACCGTTCTGGAAAACCTTGAAGTGGTCGAAGGGGTGGGGAA CCGCGCCCGGCAGATCGCCAAGATGATCGAGCGTTTCCCCGCCCTCGCCGCCCGCCGCGCCACCCGCGCCGGGGCGCTGT CGGGCGGTGAGCGCCAGCAACTGGCCTTCGCCCGCGCCCTGATGCCCGCCCCCCGGCTGGTCATCCTCGATGAACCGACG GCGGCCCTTTCCCCCGCCCTGGTCACCGGCGTTCTCGAGACCATTCGCGGCCTGCCGGGGCTGGGCGTTTCGGTGCTGCT GGTCGAACAGCGCGCCCGTCAGGCCCTGGCGATCAGCGATCAGGGCTGCATCCTTGATAGCGGCAAGGTGGTGATCGCCG ATCGCGCCAGCGCCTTGCTGGCCGACGAGCGCATGGCCGAATTGTACCTGGGCGAGCATTGA
Upstream 100 bases:
>100_bases ACCTGTTCGTCATCGACCGCGGCACCCTGCTGGCCGAGGGCCATCCGGCCGCCGTTCTGGCCGACCCCCGCGTGCGCGAA GCCTATATGGGAGGCGTGGT
Downstream 100 bases:
>100_bases CCCGATGCCCGCTCCTTCGTCTCCATAAGGAAGCAGACCATTATGCGTGAGACCGTTTTCCGCAATGCCCGTGTTCTTGA CGTCGCCCGTGGAGCCTATG
Product: ABC transporter protein
Products: ADP; phosphate; L-leucine [Cytoplasm]; ADP; L-valine [Cytoplasm]; L-iso-leucine [Cytoplasm] [C]
Alternate protein names: LIV-I protein F [H]
Number of amino acids: Translated: 233; Mature: 232
Protein sequence:
>233_residues MSVLVVEGMAAGYGDVDILSDIALRVDPLEIVTIAGTNGAGKSTLVKGLMGLLTRIRGKVEFEGTSLLGVAAERRIHLGI SYVPQVNNVFPSLTVLENLEVVEGVGNRARQIAKMIERFPALAARRATRAGALSGGERQQLAFARALMPAPRLVILDEPT AALSPALVTGVLETIRGLPGLGVSVLLVEQRARQALAISDQGCILDSGKVVIADRASALLADERMAELYLGEH
Sequences:
>Translated_233_residues MSVLVVEGMAAGYGDVDILSDIALRVDPLEIVTIAGTNGAGKSTLVKGLMGLLTRIRGKVEFEGTSLLGVAAERRIHLGI SYVPQVNNVFPSLTVLENLEVVEGVGNRARQIAKMIERFPALAARRATRAGALSGGERQQLAFARALMPAPRLVILDEPT AALSPALVTGVLETIRGLPGLGVSVLLVEQRARQALAISDQGCILDSGKVVIADRASALLADERMAELYLGEH >Mature_232_residues SVLVVEGMAAGYGDVDILSDIALRVDPLEIVTIAGTNGAGKSTLVKGLMGLLTRIRGKVEFEGTSLLGVAAERRIHLGIS YVPQVNNVFPSLTVLENLEVVEGVGNRARQIAKMIERFPALAARRATRAGALSGGERQQLAFARALMPAPRLVILDEPTA ALSPALVTGVLETIRGLPGLGVSVLLVEQRARQALAISDQGCILDSGKVVIADRASALLADERMAELYLGEH
Specific function: Component of the leucine-specific transport system [H]
COG id: COG0410
COG function: function code E; ABC-type branched-chain amino acid transport systems, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI153792144, Length=156, Percent_Identity=33.3333333333333, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI45446740, Length=216, Percent_Identity=30.5555555555556, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI47078218, Length=216, Percent_Identity=30.5555555555556, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI46592964, Length=216, Percent_Identity=31.0185185185185, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI46592971, Length=216, Percent_Identity=31.0185185185185, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI46592898, Length=216, Percent_Identity=31.0185185185185, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI46592978, Length=216, Percent_Identity=31.0185185185185, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI46592956, Length=216, Percent_Identity=31.0185185185185, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI46592915, Length=216, Percent_Identity=31.0185185185185, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI27436953, Length=197, Percent_Identity=31.4720812182741, Blast_Score=72, Evalue=3e-13, Organism=Homo sapiens, GI27477115, Length=196, Percent_Identity=28.0612244897959, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI255708477, Length=216, Percent_Identity=30.5555555555556, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI31657092, Length=204, Percent_Identity=25.9803921568627, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI148612844, Length=216, Percent_Identity=30.5555555555556, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI21536376, Length=194, Percent_Identity=29.3814432989691, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI105990541, Length=187, Percent_Identity=30.4812834224599, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI6005701, Length=187, Percent_Identity=28.8770053475936, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI27262624, Length=194, Percent_Identity=26.8041237113402, Blast_Score=68, Evalue=6e-12, Organism=Homo sapiens, GI27262626, Length=194, Percent_Identity=26.8041237113402, Blast_Score=68, Evalue=6e-12, Organism=Homo sapiens, GI9955963, Length=221, Percent_Identity=28.0542986425339, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI9961250, Length=213, Percent_Identity=29.5774647887324, Blast_Score=65, Evalue=4e-11, Organism=Homo sapiens, GI4505771, Length=213, Percent_Identity=29.5774647887324, Blast_Score=65, Evalue=4e-11, Organism=Homo sapiens, GI150417984, Length=195, Percent_Identity=29.7435897435897, Blast_Score=65, Evalue=5e-11, Organism=Escherichia coli, GI87082268, Length=232, Percent_Identity=38.3620689655172, Blast_Score=161, Evalue=4e-41, Organism=Escherichia coli, GI1789593, Length=240, Percent_Identity=31.25, Blast_Score=113, Evalue=1e-26, Organism=Escherichia coli, GI1789672, Length=217, Percent_Identity=30.8755760368664, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI1788225, Length=239, Percent_Identity=31.7991631799163, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1787792, Length=225, Percent_Identity=29.3333333333333, Blast_Score=100, Evalue=7e-23, Organism=Escherichia coli, GI1789991, Length=238, Percent_Identity=29.8319327731092, Blast_Score=94, Evalue=6e-21, Organism=Escherichia coli, GI1790190, Length=238, Percent_Identity=28.9915966386555, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1786872, Length=233, Percent_Identity=29.1845493562232, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1788472, Length=232, Percent_Identity=26.2931034482759, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1790467, Length=221, Percent_Identity=30.7692307692308, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1787029, Length=210, Percent_Identity=30, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI87081834, Length=196, Percent_Identity=35.7142857142857, Blast_Score=84, Evalue=6e-18, Organism=Escherichia coli, GI1788761, Length=228, Percent_Identity=25.8771929824561, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI48995001, Length=216, Percent_Identity=29.1666666666667, Blast_Score=80, Evalue=9e-17, Organism=Escherichia coli, GI1787370, Length=212, Percent_Identity=26.4150943396226, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1787712, Length=217, Percent_Identity=27.6497695852535, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1786319, Length=213, Percent_Identity=31.924882629108, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1790544, Length=257, Percent_Identity=29.1828793774319, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1786253, Length=215, Percent_Identity=32.093023255814, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1787089, Length=226, Percent_Identity=29.646017699115, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1788165, Length=174, Percent_Identity=33.3333333333333, Blast_Score=77, Evalue=7e-16, Organism=Escherichia coli, GI87081791, Length=218, Percent_Identity=27.5229357798165, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI87081782, Length=199, Percent_Identity=31.1557788944724, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1789864, Length=251, Percent_Identity=25.4980079681275, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1790525, Length=227, Percent_Identity=27.7533039647577, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1786398, Length=222, Percent_Identity=26.1261261261261, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1788450, Length=207, Percent_Identity=29.4685990338164, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1788897, Length=213, Percent_Identity=30.9859154929577, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1786563, Length=219, Percent_Identity=27.8538812785388, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI48994997, Length=232, Percent_Identity=28.0172413793103, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1788210, Length=215, Percent_Identity=26.9767441860465, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1787164, Length=208, Percent_Identity=29.3269230769231, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1786698, Length=183, Percent_Identity=32.2404371584699, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI87081709, Length=208, Percent_Identity=25.9615384615385, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1787041, Length=163, Percent_Identity=28.2208588957055, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1789891, Length=231, Percent_Identity=27.7056277056277, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI48994943, Length=164, Percent_Identity=30.4878048780488, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1789873, Length=198, Percent_Identity=27.2727272727273, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1789032, Length=201, Percent_Identity=29.3532338308458, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1788506, Length=244, Percent_Identity=25.4098360655738, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1787105, Length=190, Percent_Identity=30, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1790739, Length=220, Percent_Identity=28.1818181818182, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1786703, Length=160, Percent_Identity=33.125, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1788644, Length=216, Percent_Identity=27.7777777777778, Blast_Score=62, Evalue=5e-11, Organism=Escherichia coli, GI1789751, Length=176, Percent_Identity=28.4090909090909, Blast_Score=61, Evalue=5e-11, Organism=Escherichia coli, GI2367384, Length=211, Percent_Identity=26.5402843601896, Blast_Score=61, Evalue=7e-11, Organism=Caenorhabditis elegans, GI115533608, Length=213, Percent_Identity=29.5774647887324, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17510237, Length=227, Percent_Identity=27.7533039647577, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI71992285, Length=239, Percent_Identity=27.6150627615063, Blast_Score=77, Evalue=6e-15, Organism=Caenorhabditis elegans, GI71988343, Length=232, Percent_Identity=27.1551724137931, Blast_Score=76, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17565938, Length=209, Percent_Identity=30.1435406698565, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI71983516, Length=194, Percent_Identity=28.8659793814433, Blast_Score=74, Evalue=5e-14, Organism=Caenorhabditis elegans, GI71983510, Length=194, Percent_Identity=28.8659793814433, Blast_Score=74, Evalue=5e-14, Organism=Caenorhabditis elegans, GI71983523, Length=194, Percent_Identity=28.8659793814433, Blast_Score=74, Evalue=5e-14, Organism=Caenorhabditis elegans, GI193208177, Length=231, Percent_Identity=29.8701298701299, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17565586, Length=160, Percent_Identity=31.875, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI193209708, Length=217, Percent_Identity=26.7281105990783, Blast_Score=66, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17541710, Length=162, Percent_Identity=32.0987654320988, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71984940, Length=158, Percent_Identity=32.2784810126582, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI71992290, Length=217, Percent_Identity=29.4930875576037, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI193202349, Length=159, Percent_Identity=31.4465408805031, Blast_Score=64, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17543740, Length=170, Percent_Identity=30.5882352941176, Blast_Score=64, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17569143, Length=207, Percent_Identity=29.4685990338164, Blast_Score=64, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6321752, Length=234, Percent_Identity=28.2051282051282, Blast_Score=77, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6320339, Length=216, Percent_Identity=29.1666666666667, Blast_Score=76, Evalue=5e-15, Organism=Saccharomyces cerevisiae, GI6323959, Length=221, Percent_Identity=28.5067873303167, Blast_Score=65, Evalue=9e-12, Organism=Drosophila melanogaster, GI28574533, Length=211, Percent_Identity=27.9620853080569, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24643674, Length=210, Percent_Identity=26.1904761904762, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI21357907, Length=156, Percent_Identity=32.0512820512821, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI116007184, Length=209, Percent_Identity=26.7942583732057, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI221500365, Length=209, Percent_Identity=26.7942583732057, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24641565, Length=208, Percent_Identity=29.3269230769231, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24666092, Length=214, Percent_Identity=23.3644859813084, Blast_Score=66, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 24568; Mature: 24437
Theoretical pI: Translated: 6.55; Mature: 6.55
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVLVVEGMAAGYGDVDILSDIALRVDPLEIVTIAGTNGAGKSTLVKGLMGLLTRIRGKV CEEEEEECCCCCCCCHHHHHHHHHEECCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCE EFEGTSLLGVAAERRIHLGISYVPQVNNVFPSLTVLENLEVVEGVGNRARQIAKMIERFP EECCCEEEEHHHCCEEEECEEECCCHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHH ALAARRATRAGALSGGERQQLAFARALMPAPRLVILDEPTAALSPALVTGVLETIRGLPG HHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCC LGVSVLLVEQRARQALAISDQGCILDSGKVVIADRASALLADERMAELYLGEH CCHHHHHHHHHHHHHEEECCCCCEEECCCEEEECCHHHHHHHHHHHHHHCCCC >Mature Secondary Structure SVLVVEGMAAGYGDVDILSDIALRVDPLEIVTIAGTNGAGKSTLVKGLMGLLTRIRGKV EEEEEECCCCCCCCHHHHHHHHHEECCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCE EFEGTSLLGVAAERRIHLGISYVPQVNNVFPSLTVLENLEVVEGVGNRARQIAKMIERFP EECCCEEEEHHHCCEEEECEEECCCHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHH ALAARRATRAGALSGGERQQLAFARALMPAPRLVILDEPTAALSPALVTGVLETIRGLPG HHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCC LGVSVLLVEQRARQALAISDQGCILDSGKVVIADRASALLADERMAELYLGEH CCHHHHHHHHHHHHHEEECCCCCEEECCCEEEECCHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-leucine [Periplasm]; H2O; ATP; L-valine [Periplasm]; L-iso-leucine [Periplasm] [C]
Specific reaction: ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2195019; 8041620; 9278503 [H]