Click here to switch to the map view.

The map label for this gene is 83594689

Identifier: 83594689

GI number: 83594689

Start: 3873035

End: 3873667

Strand: Reverse

Name: 83594689

Synonym: Rru_A3360

Alternate gene names: NA

Gene position: 3873667-3873035 (Counterclockwise)

Preceding gene: 83594690

Following gene: 83594688

Centisome position: 88.99

GC content: 64.93

Gene sequence:

>633_bases
ATGAGCAAGTCGTCGTCTCCCGCCCCGACCGGCAAACCCCTGAAGGTCTTCGGTCCGCTGCTCGCCGTGCTGGTGATCGC
CATCGTCGCCATCGGCGCCCGCTTCGCCCTGATGCCAACCGGGACCGGCAGGGCGGCGGCCATCGGCGGTCCCTTCGCCC
TGGTCGATGACCGGGGCGAGACGCTTACCAACGACACTTTTGCCGGGCGCTTCATGCTGATTTATTTCGGCTATACCTAT
TGCCCCGATGTCTGCCCGACCAGCCTGGGCGAAATGGCCGCCGCCCTTGACCAGCTTCCCGAGGATCAGTTGGCCCGCAT
CGCCCCGATCTTCATCTCGGTCGATCCCGAGCGCGACACCCCCGCCCTGATCGGCGATTACGCCCGGGCCTTTCACCCGC
TGCTGATCGGCCTGACCGGCAGCCCGGCGCAGATCGCGACGGTCACCAAGGCCTATAAGGTCTATTTCAAGAAGGTCGAG
CAAGAGGCCGGCGCGCCCTATCTGGTCGATCACTCCTCGGTCACCTATCTGATGGGGCCCGATGGCCGCTTCATCACCCA
TTTCTCCCACGGCACTCCGTCCGATGAGATGGCGGCGCGGCTGAGCAAGATCCTGGCCGATACCCCCTCATGA

Upstream 100 bases:

>100_bases
GCGCCGGTGTTGTTGATTATCAACGCCGGGATTCTCGCCCTACTGGCGGTCCGGCTGGTCGTCTGATCCCGTCCGCTTTT
CGTCAGGAGCCCGCCGTCCC

Downstream 100 bases:

>100_bases
CCCTCCCTTTCGCCGCGCCTCCGCCGATCGCCCCCGGACTGATCCTGTCGGCCCCGGCTTCGGGATCGGGCAAGACAGTG
CTTACCTTGGCGATCCTGCG

Product: electron transport protein SCO1/SenC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MSKSSSPAPTGKPLKVFGPLLAVLVIAIVAIGARFALMPTGTGRAAAIGGPFALVDDRGETLTNDTFAGRFMLIYFGYTY
CPDVCPTSLGEMAAALDQLPEDQLARIAPIFISVDPERDTPALIGDYARAFHPLLIGLTGSPAQIATVTKAYKVYFKKVE
QEAGAPYLVDHSSVTYLMGPDGRFITHFSHGTPSDEMAARLSKILADTPS

Sequences:

>Translated_210_residues
MSKSSSPAPTGKPLKVFGPLLAVLVIAIVAIGARFALMPTGTGRAAAIGGPFALVDDRGETLTNDTFAGRFMLIYFGYTY
CPDVCPTSLGEMAAALDQLPEDQLARIAPIFISVDPERDTPALIGDYARAFHPLLIGLTGSPAQIATVTKAYKVYFKKVE
QEAGAPYLVDHSSVTYLMGPDGRFITHFSHGTPSDEMAARLSKILADTPS
>Mature_209_residues
SKSSSPAPTGKPLKVFGPLLAVLVIAIVAIGARFALMPTGTGRAAAIGGPFALVDDRGETLTNDTFAGRFMLIYFGYTYC
PDVCPTSLGEMAAALDQLPEDQLARIAPIFISVDPERDTPALIGDYARAFHPLLIGLTGSPAQIATVTKAYKVYFKKVEQ
EAGAPYLVDHSSVTYLMGPDGRFITHFSHGTPSDEMAARLSKILADTPS

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI4759068, Length=156, Percent_Identity=41.025641025641, Blast_Score=145, Evalue=3e-35,
Organism=Homo sapiens, GI281182727, Length=165, Percent_Identity=38.1818181818182, Blast_Score=135, Evalue=2e-32,
Organism=Homo sapiens, GI281182722, Length=165, Percent_Identity=38.1818181818182, Blast_Score=135, Evalue=2e-32,
Organism=Homo sapiens, GI281182716, Length=165, Percent_Identity=38.1818181818182, Blast_Score=135, Evalue=2e-32,
Organism=Homo sapiens, GI153791313, Length=165, Percent_Identity=38.1818181818182, Blast_Score=135, Evalue=2e-32,
Organism=Caenorhabditis elegans, GI17531419, Length=182, Percent_Identity=31.8681318681319, Blast_Score=117, Evalue=4e-27,
Organism=Saccharomyces cerevisiae, GI6319498, Length=161, Percent_Identity=41.6149068322981, Blast_Score=138, Evalue=7e-34,
Organism=Saccharomyces cerevisiae, GI6319511, Length=140, Percent_Identity=40.7142857142857, Blast_Score=126, Evalue=3e-30,
Organism=Drosophila melanogaster, GI19920710, Length=157, Percent_Identity=42.0382165605096, Blast_Score=153, Evalue=8e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 22310; Mature: 22179

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKSSSPAPTGKPLKVFGPLLAVLVIAIVAIGARFALMPTGTGRAAAIGGPFALVDDRGE
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCEEEECCCCC
TLTNDTFAGRFMLIYFGYTYCPDVCPTSLGEMAAALDQLPEDQLARIAPIFISVDPERDT
CCCCCCCCCEEEEEEECHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHEEEEEEECCCCCC
PALIGDYARAFHPLLIGLTGSPAQIATVTKAYKVYFKKVEQEAGAPYLVDHSSVTYLMGP
CHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEECC
DGRFITHFSHGTPSDEMAARLSKILADTPS
CCCEEEEECCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SKSSSPAPTGKPLKVFGPLLAVLVIAIVAIGARFALMPTGTGRAAAIGGPFALVDDRGE
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCEEEECCCCC
TLTNDTFAGRFMLIYFGYTYCPDVCPTSLGEMAAALDQLPEDQLARIAPIFISVDPERDT
CCCCCCCCCEEEEEEECHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHEEEEEEECCCCCC
PALIGDYARAFHPLLIGLTGSPAQIATVTKAYKVYFKKVEQEAGAPYLVDHSSVTYLMGP
CHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEECC
DGRFITHFSHGTPSDEMAARLSKILADTPS
CCCEEEEECCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA