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The map label for this gene is 83594625

Identifier: 83594625

GI number: 83594625

Start: 3790408

End: 3791922

Strand: Direct

Name: 83594625

Synonym: Rru_A3295

Alternate gene names: NA

Gene position: 3790408-3791922 (Clockwise)

Preceding gene: 83594624

Following gene: 83594626

Centisome position: 87.08

GC content: 63.56

Gene sequence:

>1515_bases
ATGACCCTTCCCCTGCTGACAGAAGTCGAGAAGCTTCCCACGGGAATTCCCGGGTTCGACCTGATCGCCCATGGTGGACT
GCCGGCCGGTCGAACAACGTTGATCGTCGGCACGGCTGGCAGCGCCAAAACCATCTTTTCCGCCCAGTTCCTGGCCGCCG
GCATTCAGTCCTTCGATCAGGGCGCGGTTTTTGTAACCTTCGAGGAATCGGTCGCCGATATCCGGCGCAATCTGGCCGGG
TTCGGCTGGGACATTCCGGCCTGGGAAGCCGCCGGGAAATGGAGCTTCGTCGACGCCTCGCCCTATCCGCTCGAAGATGG
CGACGTGGTCGGCTCCTATGATCTGGGCGGCCTGCTCGCGCGCATCGAACATGCGGTGCGCCAGACTCCGGCCACCCGGG
TCGTGCTTGATTCCCTGGGGGCGGTGTTCATGCGCTTCGCCGACCCGGCGACCTTGCGCAACGAATTGCTGCGCATCGCC
GCCGCGCTCAAGGACATGGGCGTCACCACCCTGATGACCGCCGAACGCTCCGAGGAAGAAGGGCCCCTGACCCGCACCGG
CATCGAGGAATTCGTCGCCGACAACGTGGTGATCCTGAGGAACCTGCGCGAGGGCGAGCGGCGGCGGCGCACCTGCGAAA
TCTTGAAATACCGGGGCGCCTATCACCAGAAGGGCGAATTCCCCTTCGCCATCCTGCCCGGATCGGGGGTCCAGGTGATT
CCGCTTTCGGCCATGGAACTGCGTCAGGGATCGTCGGATCTGCGCATCCCCTCGGGATCGGTCGATCTCGATGGCATGTG
CGGGGGCGGGTTCTTCCGCGATTCGGTGGTTCTGGTCTCGGGGGCGACGGGCACGGGCAAAACCCTGATGAGCACCCATT
TCCTCAATGGCGGACTGCAGGCGGGCGAGCGGTGCCTGCTCTTCGCTTTCGAGGAAAGCCGGCCGCAGTTGTTCCGCAAC
GCCAGCGGCTGGGGCATCGACTTCCAGGCGGCCGAAGACTCGGGCCAGTTGCGCGTCGTCTGCGACTATCCGGAAGTGGC
CTCCATCGAAGACCATCTGATCAAGATCAAAGAGGAAATCGACACCTTCCACCCCCATCGGGTGGCCGTCGACAGCCTGT
CGGCGATCGCGCGGATCTGTTCGGAACGGGGCTTTCGCGAATTCGTCATCGGCTTGACCTCGTTCATCAAGCATCAGGAG
GTCGCCGCCCTTTTCACCTCGAACACGCCGACCCTGATGGGCGGATCATCGGTCACCGAGGCCCATATCTCCTCGATCAC
CGACAGCATCATCTTGCTGCGCTACGTGGAGACCTTTGGCGAGATCAGCCGGGGCGTGATGGTCTTGAAGATGCGGGGCT
CGCGCCACGAGAAGGAGATCCGCGAGTTCGCCATCGATGCCACCGGCATGCATATCGGCCGCCCCTTCCGCACCGTGACC
GGCATCCTGGCCGGCAATCCCCAATACTCCCACCAAAGCGAGGCCGACCGCCTCGACAGACTATTTCCCAAGTGA

Upstream 100 bases:

>100_bases
GACGACGGGTCGTTGGTGATCTGATCGATGTGGACCAGGTGTGCCGCATCCTTGATCTCCCCCTCCCGCCGTCGTGCCTC
GAGAACGCGGACATAACGCC

Downstream 100 bases:

>100_bases
CGGCATCGATGGATACGTCTCCTTCCATCGATCAGGATTTCCGCACCCTGGTTGAAGTCGCGACCGACGCCATCATGGTC
ATCGGCGGTGACGGCACCAT

Product: circadian clock protein KaiC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 504; Mature: 503

Protein sequence:

>504_residues
MTLPLLTEVEKLPTGIPGFDLIAHGGLPAGRTTLIVGTAGSAKTIFSAQFLAAGIQSFDQGAVFVTFEESVADIRRNLAG
FGWDIPAWEAAGKWSFVDASPYPLEDGDVVGSYDLGGLLARIEHAVRQTPATRVVLDSLGAVFMRFADPATLRNELLRIA
AALKDMGVTTLMTAERSEEEGPLTRTGIEEFVADNVVILRNLREGERRRRTCEILKYRGAYHQKGEFPFAILPGSGVQVI
PLSAMELRQGSSDLRIPSGSVDLDGMCGGGFFRDSVVLVSGATGTGKTLMSTHFLNGGLQAGERCLLFAFEESRPQLFRN
ASGWGIDFQAAEDSGQLRVVCDYPEVASIEDHLIKIKEEIDTFHPHRVAVDSLSAIARICSERGFREFVIGLTSFIKHQE
VAALFTSNTPTLMGGSSVTEAHISSITDSIILLRYVETFGEISRGVMVLKMRGSRHEKEIREFAIDATGMHIGRPFRTVT
GILAGNPQYSHQSEADRLDRLFPK

Sequences:

>Translated_504_residues
MTLPLLTEVEKLPTGIPGFDLIAHGGLPAGRTTLIVGTAGSAKTIFSAQFLAAGIQSFDQGAVFVTFEESVADIRRNLAG
FGWDIPAWEAAGKWSFVDASPYPLEDGDVVGSYDLGGLLARIEHAVRQTPATRVVLDSLGAVFMRFADPATLRNELLRIA
AALKDMGVTTLMTAERSEEEGPLTRTGIEEFVADNVVILRNLREGERRRRTCEILKYRGAYHQKGEFPFAILPGSGVQVI
PLSAMELRQGSSDLRIPSGSVDLDGMCGGGFFRDSVVLVSGATGTGKTLMSTHFLNGGLQAGERCLLFAFEESRPQLFRN
ASGWGIDFQAAEDSGQLRVVCDYPEVASIEDHLIKIKEEIDTFHPHRVAVDSLSAIARICSERGFREFVIGLTSFIKHQE
VAALFTSNTPTLMGGSSVTEAHISSITDSIILLRYVETFGEISRGVMVLKMRGSRHEKEIREFAIDATGMHIGRPFRTVT
GILAGNPQYSHQSEADRLDRLFPK
>Mature_503_residues
TLPLLTEVEKLPTGIPGFDLIAHGGLPAGRTTLIVGTAGSAKTIFSAQFLAAGIQSFDQGAVFVTFEESVADIRRNLAGF
GWDIPAWEAAGKWSFVDASPYPLEDGDVVGSYDLGGLLARIEHAVRQTPATRVVLDSLGAVFMRFADPATLRNELLRIAA
ALKDMGVTTLMTAERSEEEGPLTRTGIEEFVADNVVILRNLREGERRRRTCEILKYRGAYHQKGEFPFAILPGSGVQVIP
LSAMELRQGSSDLRIPSGSVDLDGMCGGGFFRDSVVLVSGATGTGKTLMSTHFLNGGLQAGERCLLFAFEESRPQLFRNA
SGWGIDFQAAEDSGQLRVVCDYPEVASIEDHLIKIKEEIDTFHPHRVAVDSLSAIARICSERGFREFVIGLTSFIKHQEV
AALFTSNTPTLMGGSSVTEAHISSITDSIILLRYVETFGEISRGVMVLKMRGSRHEKEIREFAIDATGMHIGRPFRTVTG
ILAGNPQYSHQSEADRLDRLFPK

Specific function: Unknown

COG id: COG0467

COG function: function code T; RecA-superfamily ATPases implicated in signal transduction

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 kaiC domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014774
- InterPro:   IPR013503
- InterPro:   IPR010624 [H]

Pfam domain/function: PF06745 KaiC [H]

EC number: NA

Molecular weight: Translated: 54910; Mature: 54779

Theoretical pI: Translated: 5.65; Mature: 5.65

Prosite motif: PS51146 KAIC ; PS50162 RECA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLPLLTEVEKLPTGIPGFDLIAHGGLPAGRTTLIVGTAGSAKTIFSAQFLAAGIQSFDQ
CCCCHHHHHHHCCCCCCCHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCC
GAVFVTFEESVADIRRNLAGFGWDIPAWEAAGKWSFVDASPYPLEDGDVVGSYDLGGLLA
CEEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEECCCCHHHHHH
RIEHAVRQTPATRVVLDSLGAVFMRFADPATLRNELLRIAAALKDMGVTTLMTAERSEEE
HHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC
GPLTRTGIEEFVADNVVILRNLREGERRRRTCEILKYRGAYHQKGEFPFAILPGSGVQVI
CCCCHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCEEE
PLSAMELRQGSSDLRIPSGSVDLDGMCGGGFFRDSVVLVSGATGTGKTLMSTHFLNGGLQ
ECCHHHHHCCCCCCCCCCCCCCCCCCCCCCEECCCEEEEECCCCCCCHHHHHHHHCCCCC
AGERCLLFAFEESRPQLFRNASGWGIDFQAAEDSGQLRVVCDYPEVASIEDHLIKIKEEI
CCCEEEEEEEECCCHHHHCCCCCCCEEEEECCCCCCEEEEECCCCCCCHHHHHHHHHHHH
DTFHPHRVAVDSLSAIARICSERGFREFVIGLTSFIKHQEVAALFTSNTPTLMGGSSVTE
HCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEECCCCCEECCCCHHH
AHISSITDSIILLRYVETFGEISRGVMVLKMRGSRHEKEIREFAIDATGMHIGRPFRTVT
HHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCHHHHH
GILAGNPQYSHQSEADRLDRLFPK
HHEECCCCCCCCHHHHHHHHCCCC
>Mature Secondary Structure 
TLPLLTEVEKLPTGIPGFDLIAHGGLPAGRTTLIVGTAGSAKTIFSAQFLAAGIQSFDQ
CCCHHHHHHHCCCCCCCHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCC
GAVFVTFEESVADIRRNLAGFGWDIPAWEAAGKWSFVDASPYPLEDGDVVGSYDLGGLLA
CEEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEECCCCHHHHHH
RIEHAVRQTPATRVVLDSLGAVFMRFADPATLRNELLRIAAALKDMGVTTLMTAERSEEE
HHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC
GPLTRTGIEEFVADNVVILRNLREGERRRRTCEILKYRGAYHQKGEFPFAILPGSGVQVI
CCCCHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCEEE
PLSAMELRQGSSDLRIPSGSVDLDGMCGGGFFRDSVVLVSGATGTGKTLMSTHFLNGGLQ
ECCHHHHHCCCCCCCCCCCCCCCCCCCCCCEECCCEEEEECCCCCCCHHHHHHHHCCCCC
AGERCLLFAFEESRPQLFRNASGWGIDFQAAEDSGQLRVVCDYPEVASIEDHLIKIKEEI
CCCEEEEEEEECCCHHHHCCCCCCCEEEEECCCCCCEEEEECCCCCCCHHHHHHHHHHHH
DTFHPHRVAVDSLSAIARICSERGFREFVIGLTSFIKHQEVAALFTSNTPTLMGGSSVTE
HCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEECCCCCEECCCCHHH
AHISSITDSIILLRYVETFGEISRGVMVLKMRGSRHEKEIREFAIDATGMHIGRPFRTVT
HHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCHHHHH
GILAGNPQYSHQSEADRLDRLFPK
HHEECCCCCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]