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The map label for this gene is phyR [H]

Identifier: 83594615

GI number: 83594615

Start: 3781210

End: 3782007

Strand: Reverse

Name: phyR [H]

Synonym: Rru_A3285

Alternate gene names: 83594615

Gene position: 3782007-3781210 (Counterclockwise)

Preceding gene: 83594622

Following gene: 83594608

Centisome position: 86.89

GC content: 64.16

Gene sequence:

>798_bases
ATGCCCGCTACGGCCGTGTCGCAAGCCGTTGTCCACCAGCTTCCGTTTCTTCGCCGCTATGCCCGCGCGTTGTGTGGCGA
TCAGATCGCCGGGGATGAAGTCGTCAAGGCCGTCCTCGAGGTGATCGTCGCCGATCCGCGGGTGATCCCCGATGTGACCG
ATCTTCGCGTCCGTCTTTACCAGTTGTTTCATAAGGTGTGGATGTCGGCGGGATCCCTGTCGGCGCCGGCCGAGGATGCC
GAGACCGATATTCAACGCCGGGTCAGCCAGCTTCCCGCGGAAGACCGCCAAGCGCTGTTGCTCGTCGCCATGGAAGGGTT
CACCCTGGCCGAAGCGGCGATGGTTCTTGGCCGCGACGACAGCCAAACCGCCGCGTTGGTCGATCAGGCCCGTCTGGCCA
TGGCCCAGCAGGAAAGCACCCGGGTTCTGGTCATCGAGGACGAGCCGATCATCGGCCTCGATATCGCCAATATCGTCGAG
AGCATGGGGCATCGGGTGGTCGGCATCGCCGCGACCCGCGCCGAGGCCGAGGCGATGGCCCTTGAAAAGAAGCCGGGGCT
GGTTCTGGCCGATATCCAACTGGCCGATGGCAGTTCCGGCATCGATGCCGCCCGCTCGATTCTGGCCGGGGCGGATATTC
CGATCGTTTTCATCACCGCCTATCCCGAGCGCCTGCTGACCGGCCAGCGCCCGGAACCGACCTATCTGGTGACCAAGCCT
TTCGCCGTTGATACGGTGAAAGTGACCATCGCCCAGGCGCTGTTCTTCCGTCAGGCCCAGCCGGTCGCCGCCGAATAA

Upstream 100 bases:

>100_bases
AGGGAACCAACCAGACACCCCAGGTGTTTGAGCAAGGCGAAATACCGCGTGTTCGGCCGCTTGGCCGGCGTCACTATACT
TTTAGTCAGGGGGTGAGCCC

Downstream 100 bases:

>100_bases
ATCGGCGATCGTGCGAGACGGCGCGATAGAACCATCGGCCCTGGAACGAAAAAAACCCGAAAGGGGGAGCCTCGCGCTCC
CCTTTTTGGGTTTTCACGGG

Product: two-component response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 264

Protein sequence:

>265_residues
MPATAVSQAVVHQLPFLRRYARALCGDQIAGDEVVKAVLEVIVADPRVIPDVTDLRVRLYQLFHKVWMSAGSLSAPAEDA
ETDIQRRVSQLPAEDRQALLLVAMEGFTLAEAAMVLGRDDSQTAALVDQARLAMAQQESTRVLVIEDEPIIGLDIANIVE
SMGHRVVGIAATRAEAEAMALEKKPGLVLADIQLADGSSGIDAARSILAGADIPIVFITAYPERLLTGQRPEPTYLVTKP
FAVDTVKVTIAQALFFRQAQPVAAE

Sequences:

>Translated_265_residues
MPATAVSQAVVHQLPFLRRYARALCGDQIAGDEVVKAVLEVIVADPRVIPDVTDLRVRLYQLFHKVWMSAGSLSAPAEDA
ETDIQRRVSQLPAEDRQALLLVAMEGFTLAEAAMVLGRDDSQTAALVDQARLAMAQQESTRVLVIEDEPIIGLDIANIVE
SMGHRVVGIAATRAEAEAMALEKKPGLVLADIQLADGSSGIDAARSILAGADIPIVFITAYPERLLTGQRPEPTYLVTKP
FAVDTVKVTIAQALFFRQAQPVAAE
>Mature_264_residues
PATAVSQAVVHQLPFLRRYARALCGDQIAGDEVVKAVLEVIVADPRVIPDVTDLRVRLYQLFHKVWMSAGSLSAPAEDAE
TDIQRRVSQLPAEDRQALLLVAMEGFTLAEAAMVLGRDDSQTAALVDQARLAMAQQESTRVLVIEDEPIIGLDIANIVES
MGHRVVGIAATRAEAEAMALEKKPGLVLADIQLADGSSGIDAARSILAGADIPIVFITAYPERLLTGQRPEPTYLVTKPF
AVDTVKVTIAQALFFRQAQPVAAE

Specific function: Key regulator for adaptation to epiphytic life (leaf colonizing) of the bacterium. Positively regulates several genes including katE, sodA, hsp20, dps and gloA. However it is not known whether this regulation is direct or indirect. Also induces several de

COG id: COG0784

COG function: function code T; FOG: CheY-like receiver

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR014605
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 28516; Mature: 28385

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPATAVSQAVVHQLPFLRRYARALCGDQIAGDEVVKAVLEVIVADPRVIPDVTDLRVRLY
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
QLFHKVWMSAGSLSAPAEDAETDIQRRVSQLPAEDRQALLLVAMEGFTLAEAAMVLGRDD
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHCCCC
SQTAALVDQARLAMAQQESTRVLVIEDEPIIGLDIANIVESMGHRVVGIAATRAEAEAMA
CHHHHHHHHHHHHHHHCCCCEEEEEECCCEEECCHHHHHHHHCCEEEEEEEHHHHHHHHH
LEKKPGLVLADIQLADGSSGIDAARSILAGADIPIVFITAYPERLLTGQRPEPTYLVTKP
HHCCCCEEEEEEEECCCCCCHHHHHHHHCCCCCCEEEEEECCHHHHCCCCCCCCEEEECC
FAVDTVKVTIAQALFFRQAQPVAAE
CCHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
PATAVSQAVVHQLPFLRRYARALCGDQIAGDEVVKAVLEVIVADPRVIPDVTDLRVRLY
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
QLFHKVWMSAGSLSAPAEDAETDIQRRVSQLPAEDRQALLLVAMEGFTLAEAAMVLGRDD
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHCCCC
SQTAALVDQARLAMAQQESTRVLVIEDEPIIGLDIANIVESMGHRVVGIAATRAEAEAMA
CHHHHHHHHHHHHHHHCCCCEEEEEECCCEEECCHHHHHHHHCCEEEEEEEHHHHHHHHH
LEKKPGLVLADIQLADGSSGIDAARSILAGADIPIVFITAYPERLLTGQRPEPTYLVTKP
HHCCCCEEEEEEEECCCCCCHHHHHHHHCCCCCCEEEEEECCHHHHCCCCCCCCEEEECC
FAVDTVKVTIAQALFFRQAQPVAAE
CCHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA