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The map label for this gene is agmR [H]

Identifier: 83594559

GI number: 83594559

Start: 3722842

End: 3723516

Strand: Reverse

Name: agmR [H]

Synonym: Rru_A3229

Alternate gene names: 83594559

Gene position: 3723516-3722842 (Counterclockwise)

Preceding gene: 83594560

Following gene: 83594558

Centisome position: 85.54

GC content: 64.44

Gene sequence:

>675_bases
TTGAAAATCCTGATCGCCGACGACCACGAATTGTTCCGCGATGGCTTGCGGCTTGTTCTGTCCAGCCTTGATCCGGCCCT
TGAGGTCGTCGAGGCCTGTACCTATGACGAGGCGCTGCGTCTGGTTTCGACCAATGGCGACGGGGCCGAGGCCTTCACCC
TGATCCTGGTCGATCTGGTCATGCCCGGATTGCCGTGGAGCGAAGGCCTGCAGGCGCTGCGGTTGGCGGCACCCGAAACG
CCGGTGGTGGTGCTTTCGGCCAGCGAGGACCGCAAGCTGGTGCGCGACGCCGTGCGGCTGGGCGCCTCGGGCTTCATTCC
CAAGACATCAAGCAGCCGGGTGATGATCAGCGCCCTCAAGCTGGTTTTATCGGGCGGCATGTATCTGCCGGCCGCCTTGC
TTGACGATGAGGTCATCGTTGAACCGGTGGCGGTTCAAGCGCCCGCGGGCGGGGCCGGCGGACCGACTGGTCCCACCGCC
TCACGGTTGACTCCGCGACAGGGCGAGGTGTTGCGGTTGCTGGGACAGGGCAAGTCGAACAAGGAAATTGCCCGCGTGCT
TGACCTGTCGGAAGGAACGGTCAAACTTCACGTGACGGCCATTCTCAAGGCCCTTGGCGTCAATAACCGGACCGGCGCGG
TGATCGCCGCCCAACGCCTGGGGCTGACCGGCTAG

Upstream 100 bases:

>100_bases
TGGCATACTTGCTCCCAGCGCGCCCGGGCAAGCGATATCGGGCGGGGTCTGGACCGGGTCGCCGCCTGTTGTCCGCGACC
GCTGTGGCGGAGTCTGCCCT

Downstream 100 bases:

>100_bases
ATTACATCCCCTCCCCCTGGCGATCCCGACCGGGGGGCGGCGATGATTTACTCCCCTAATCAAGATCTTGGAACGGGAGG
GCCCGTTCTTTTCATTCCCC

Product: two component LuxR family transcriptional regulator

Products: NA

Alternate protein names: Protein AgmR [H]

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MKILIADDHELFRDGLRLVLSSLDPALEVVEACTYDEALRLVSTNGDGAEAFTLILVDLVMPGLPWSEGLQALRLAAPET
PVVVLSASEDRKLVRDAVRLGASGFIPKTSSSRVMISALKLVLSGGMYLPAALLDDEVIVEPVAVQAPAGGAGGPTGPTA
SRLTPRQGEVLRLLGQGKSNKEIARVLDLSEGTVKLHVTAILKALGVNNRTGAVIAAQRLGLTG

Sequences:

>Translated_224_residues
MKILIADDHELFRDGLRLVLSSLDPALEVVEACTYDEALRLVSTNGDGAEAFTLILVDLVMPGLPWSEGLQALRLAAPET
PVVVLSASEDRKLVRDAVRLGASGFIPKTSSSRVMISALKLVLSGGMYLPAALLDDEVIVEPVAVQAPAGGAGGPTGPTA
SRLTPRQGEVLRLLGQGKSNKEIARVLDLSEGTVKLHVTAILKALGVNNRTGAVIAAQRLGLTG
>Mature_224_residues
MKILIADDHELFRDGLRLVLSSLDPALEVVEACTYDEALRLVSTNGDGAEAFTLILVDLVMPGLPWSEGLQALRLAAPET
PVVVLSASEDRKLVRDAVRLGASGFIPKTSSSRVMISALKLVLSGGMYLPAALLDDEVIVEPVAVQAPAGGAGGPTGPTA
SRLTPRQGEVLRLLGQGKSNKEIARVLDLSEGTVKLHVTAILKALGVNNRTGAVIAAQRLGLTG

Specific function: Positive activator for glycerol metabolism [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=223, Percent_Identity=33.1838565022422, Blast_Score=91, Evalue=4e-20,
Organism=Escherichia coli, GI1787473, Length=214, Percent_Identity=33.6448598130841, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788222, Length=226, Percent_Identity=23.4513274336283, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790102, Length=210, Percent_Identity=30.952380952381, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786747, Length=155, Percent_Identity=27.741935483871, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23404; Mature: 23404

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILIADDHELFRDGLRLVLSSLDPALEVVEACTYDEALRLVSTNGDGAEAFTLILVDLV
CEEEEECCHHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHEEEECCCCCHHHHHHHHHHHH
MPGLPWSEGLQALRLAAPETPVVVLSASEDRKLVRDAVRLGASGFIPKTSSSRVMISALK
CCCCCHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
LVLSGGMYLPAALLDDEVIVEPVAVQAPAGGAGGPTGPTASRLTPRQGEVLRLLGQGKSN
HHHHCCCCCCHHHCCCCCEECCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCC
KEIARVLDLSEGTVKLHVTAILKALGVNNRTGAVIAAQRLGLTG
HHHHHHHCCCCCEEEEEHHHHHHHHCCCCCCCCEEEHHHCCCCC
>Mature Secondary Structure
MKILIADDHELFRDGLRLVLSSLDPALEVVEACTYDEALRLVSTNGDGAEAFTLILVDLV
CEEEEECCHHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHEEEECCCCCHHHHHHHHHHHH
MPGLPWSEGLQALRLAAPETPVVVLSASEDRKLVRDAVRLGASGFIPKTSSSRVMISALK
CCCCCHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
LVLSGGMYLPAALLDDEVIVEPVAVQAPAGGAGGPTGPTASRLTPRQGEVLRLLGQGKSN
HHHHCCCCCCHHHCCCCCEECCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCC
KEIARVLDLSEGTVKLHVTAILKALGVNNRTGAVIAAQRLGLTG
HHHHHHHCCCCCEEEEEHHHHHHHHCCCCCCCCEEEHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1938886; 10984043 [H]