Click here to switch to the map view.

The map label for this gene is potC [C]

Identifier: 83594530

GI number: 83594530

Start: 3686649

End: 3688373

Strand: Direct

Name: potC [C]

Synonym: Rru_A3200

Alternate gene names: 83594530

Gene position: 3686649-3688373 (Clockwise)

Preceding gene: 83594529

Following gene: 83594531

Centisome position: 84.7

GC content: 70.43

Gene sequence:

>1725_bases
ATGATTGTACCGCGCGCCTTGTCCCGTCGCCTGCCCTCGCGCCTGACCAGTGAGTCCCTGCTTCTGGGCGGCGCCACGCT
TTATGTGGCGGTGTTCTGCCTGCTGCCGCTGCTGCGCCTGCTGGCCGAACCGCTGGCCGCCGACACCGGCGGCGGCTGGC
AGATGGTCGTCCGGGTGCTCGGCGCCCGGGCGACGACCACCGCCTTTTGGAATACCCTGGAGGCCGGGCTGGCCTCGACA
CTGCTGGCCGTCGTCGTCGGCGGCGGGCTGGCGATCGTCGTCGGCCTGACCACGGTACGGGCGCGCGGGCTTTTGACCTT
CATCTGCCTGATCCCGCTGCTCATCCCCGCCCAGATCGCCGCCCTGGCCTGGCTGGAGCTGGCCGGCCCCAACAGCCCGC
TGTTGCGCCTGATCGGCCTGGGCGTTGCCACCGGCCAGCGCAACCCGCTTTATTCGGCCGGCGGGGTGATCTGGCTGCTT
GGCCTGGAACACGCGCCGATGGTTTTTCTGGCGGCGCGGGCCGGCTTGCGCGCCCTGCCCAATGATCTGGTGGAAGCCGC
CCGCATGGCCGGAGCCAGGGGCCCGCGCATTGTTCTGACCATCGTTCTGCCGCTGCTGCGCCCGGCGCTGCTGGCCGGGG
CGGCCCTGGCCTTCGTCTCGGCGATCGGCAATTTCGGCGTTTCGGCCCTGCTGGGCATTCCCGGCCGCTTCCCGATGCTG
ACCACCCTGATCTATCGCCGCCTCAACGGCTTTGGCCCCGATGTGCTGGCCGAGGTCGCCGTGCTGGCGATGATTCTGGC
CGGACTGGCCGGCGCCGGGCTGCTGCTGCAGGCCTGGGCCTGGGGTCGGCAGAACCGCCATGCCGCCCGCGACACCGCCG
CCCTCGCCCCCCTGCCGCTCGGCCGCTGGCGGCTGCTGGTCGAAGGCGGGCTGTGGCTTTTCCTCGGGCTGACCGCGCTG
ATGCCGCTGGCCGCCCTGACCGGCGCCGCCCTGGCCCCCGCCCTGGGCGTGGCCACCACCTGGGACAGCGCCACCCTCGA
TCATTTCCGGGCGGTCTTCGCCAATCCGGTGATGCTGCGCGCCCTGACCAACAGCTTCACCCTGGCCACGGTGGCCGGGG
GAGTGGGGTTGGTGGTCGCCGCGCCGCTGGCCTATTTCATCGTCACCCGCCGCGCGCCCCTGGCCCGGGCGCTCAATTAC
ATCGCCGATATGCCCTATGCGCTGCCCGGCATCATTTTGTCGATAAGCTGCATCCTTTTATACCTCAAGCCGCTGCCCGG
CCTGGGGATCGGCCTTTACAACAGTTTCTGGATCCTGCTGGTCGCCTATCTCGGCCGTTTCCTGGCGCTGTCGCTGCGCC
CGGCGATGGCCGGGGTCGCCCAGATCGATCCGGCCCTGGAAGAGGCGGCGCGGGTCGCCGGCGCCGGACCGATGGCGCGG
TTCTTCGCCATCGTCTTGCCTTTGGCGGCGCCGGCGGCGGCGGCCGGCGGCCTGCTGGTCTTCCTCGCCGCCTTCAACGA
ATTGACCGTCTCGGCGCTTTTGTGGTCGGCGGGTCATGAGACCCTGGGGGTGATGGTGTTCTCGCTGACCGACGAAGGCA
ATTCCAACGCGGCGGCGGCGGTTTCGGTGATCGCCGTTCTGGCGACCCTGGCCGTCGCCCTGGCCGCTACCGTGTTCGCC
CGGGCGGCCCGCCTGCCCAAGGGAGTTCTGCCATGGCAAGACTAA

Upstream 100 bases:

>100_bases
GCTGTTGATCTCGGTCGATCCCGAAATCCTGATCAAGGACGACGAGCAGACCAAGCGAACCTTCTCCGATCTGTTTGGTG
GCTGAGTCTCACGCCCCGGA

Downstream 100 bases:

>100_bases
GCCTTGACGGCGTAAGCCGCCAGTTCGGCGCCCGCACCGCCGTCGACCGCGTGTCGCTGACCCTGGAGCCCGGGACCTTC
CTGGCGTTGCTTGGGCCTTC

Product: binding-protein dependent transport system inner membrane protein

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 574; Mature: 574

Protein sequence:

>574_residues
MIVPRALSRRLPSRLTSESLLLGGATLYVAVFCLLPLLRLLAEPLAADTGGGWQMVVRVLGARATTTAFWNTLEAGLAST
LLAVVVGGGLAIVVGLTTVRARGLLTFICLIPLLIPAQIAALAWLELAGPNSPLLRLIGLGVATGQRNPLYSAGGVIWLL
GLEHAPMVFLAARAGLRALPNDLVEAARMAGARGPRIVLTIVLPLLRPALLAGAALAFVSAIGNFGVSALLGIPGRFPML
TTLIYRRLNGFGPDVLAEVAVLAMILAGLAGAGLLLQAWAWGRQNRHAARDTAALAPLPLGRWRLLVEGGLWLFLGLTAL
MPLAALTGAALAPALGVATTWDSATLDHFRAVFANPVMLRALTNSFTLATVAGGVGLVVAAPLAYFIVTRRAPLARALNY
IADMPYALPGIILSISCILLYLKPLPGLGIGLYNSFWILLVAYLGRFLALSLRPAMAGVAQIDPALEEAARVAGAGPMAR
FFAIVLPLAAPAAAAGGLLVFLAAFNELTVSALLWSAGHETLGVMVFSLTDEGNSNAAAAVSVIAVLATLAVALAATVFA
RAARLPKGVLPWQD

Sequences:

>Translated_574_residues
MIVPRALSRRLPSRLTSESLLLGGATLYVAVFCLLPLLRLLAEPLAADTGGGWQMVVRVLGARATTTAFWNTLEAGLAST
LLAVVVGGGLAIVVGLTTVRARGLLTFICLIPLLIPAQIAALAWLELAGPNSPLLRLIGLGVATGQRNPLYSAGGVIWLL
GLEHAPMVFLAARAGLRALPNDLVEAARMAGARGPRIVLTIVLPLLRPALLAGAALAFVSAIGNFGVSALLGIPGRFPML
TTLIYRRLNGFGPDVLAEVAVLAMILAGLAGAGLLLQAWAWGRQNRHAARDTAALAPLPLGRWRLLVEGGLWLFLGLTAL
MPLAALTGAALAPALGVATTWDSATLDHFRAVFANPVMLRALTNSFTLATVAGGVGLVVAAPLAYFIVTRRAPLARALNY
IADMPYALPGIILSISCILLYLKPLPGLGIGLYNSFWILLVAYLGRFLALSLRPAMAGVAQIDPALEEAARVAGAGPMAR
FFAIVLPLAAPAAAAGGLLVFLAAFNELTVSALLWSAGHETLGVMVFSLTDEGNSNAAAAVSVIAVLATLAVALAATVFA
RAARLPKGVLPWQD
>Mature_574_residues
MIVPRALSRRLPSRLTSESLLLGGATLYVAVFCLLPLLRLLAEPLAADTGGGWQMVVRVLGARATTTAFWNTLEAGLAST
LLAVVVGGGLAIVVGLTTVRARGLLTFICLIPLLIPAQIAALAWLELAGPNSPLLRLIGLGVATGQRNPLYSAGGVIWLL
GLEHAPMVFLAARAGLRALPNDLVEAARMAGARGPRIVLTIVLPLLRPALLAGAALAFVSAIGNFGVSALLGIPGRFPML
TTLIYRRLNGFGPDVLAEVAVLAMILAGLAGAGLLLQAWAWGRQNRHAARDTAALAPLPLGRWRLLVEGGLWLFLGLTAL
MPLAALTGAALAPALGVATTWDSATLDHFRAVFANPVMLRALTNSFTLATVAGGVGLVVAAPLAYFIVTRRAPLARALNY
IADMPYALPGIILSISCILLYLKPLPGLGIGLYNSFWILLVAYLGRFLALSLRPAMAGVAQIDPALEEAARVAGAGPMAR
FFAIVLPLAAPAAAAGGLLVFLAAFNELTVSALLWSAGHETLGVMVFSLTDEGNSNAAAAVSVIAVLATLAVALAATVFA
RAARLPKGVLPWQD

Specific function: Probably part of the binding-protein-dependent transport system y4fNOP. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1178

COG function: function code P; ABC-type Fe3+ transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transmembrane type-1 domains [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=226, Percent_Identity=26.9911504424779, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 59485; Mature: 59485

Theoretical pI: Translated: 11.12; Mature: 11.12

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVPRALSRRLPSRLTSESLLLGGATLYVAVFCLLPLLRLLAEPLAADTGGGWQMVVRVL
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
GARATTTAFWNTLEAGLASTLLAVVVGGGLAIVVGLTTVRARGLLTFICLIPLLIPAQIA
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALAWLELAGPNSPLLRLIGLGVATGQRNPLYSAGGVIWLLGLEHAPMVFLAARAGLRALP
HHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCC
NDLVEAARMAGARGPRIVLTIVLPLLRPALLAGAALAFVSAIGNFGVSALLGIPGRFPML
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHH
TTLIYRRLNGFGPDVLAEVAVLAMILAGLAGAGLLLQAWAWGRQNRHAARDTAALAPLPL
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHCCCCCC
GRWRLLVEGGLWLFLGLTALMPLAALTGAALAPALGVATTWDSATLDHFRAVFANPVMLR
CHHEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCHHHHH
ALTNSFTLATVAGGVGLVVAAPLAYFIVTRRAPLARALNYIADMPYALPGIILSISCILL
HHHCCHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
YLKPLPGLGIGLYNSFWILLVAYLGRFLALSLRPAMAGVAQIDPALEEAARVAGAGPMAR
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHH
FFAIVLPLAAPAAAAGGLLVFLAAFNELTVSALLWSAGHETLGVMVFSLTDEGNSNAAAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCHHHH
VSVIAVLATLAVALAATVFARAARLPKGVLPWQD
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MIVPRALSRRLPSRLTSESLLLGGATLYVAVFCLLPLLRLLAEPLAADTGGGWQMVVRVL
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
GARATTTAFWNTLEAGLASTLLAVVVGGGLAIVVGLTTVRARGLLTFICLIPLLIPAQIA
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALAWLELAGPNSPLLRLIGLGVATGQRNPLYSAGGVIWLLGLEHAPMVFLAARAGLRALP
HHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCC
NDLVEAARMAGARGPRIVLTIVLPLLRPALLAGAALAFVSAIGNFGVSALLGIPGRFPML
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHH
TTLIYRRLNGFGPDVLAEVAVLAMILAGLAGAGLLLQAWAWGRQNRHAARDTAALAPLPL
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHCCCCCC
GRWRLLVEGGLWLFLGLTALMPLAALTGAALAPALGVATTWDSATLDHFRAVFANPVMLR
CHHEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCHHHHH
ALTNSFTLATVAGGVGLVVAAPLAYFIVTRRAPLARALNYIADMPYALPGIILSISCILL
HHHCCHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
YLKPLPGLGIGLYNSFWILLVAYLGRFLALSLRPAMAGVAQIDPALEEAARVAGAGPMAR
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHH
FFAIVLPLAAPAAAAGGLLVFLAAFNELTVSALLWSAGHETLGVMVFSLTDEGNSNAAAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCHHHH
VSVIAVLATLAVALAATVFARAARLPKGVLPWQD
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]