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The map label for this gene is fliN [H]

Identifier: 83594500

GI number: 83594500

Start: 3663394

End: 3663675

Strand: Direct

Name: fliN [H]

Synonym: Rru_A3170

Alternate gene names: 83594500

Gene position: 3663394-3663675 (Clockwise)

Preceding gene: 83594499

Following gene: 83594504

Centisome position: 84.16

GC content: 58.87

Gene sequence:

>282_bases
ATGGCTGACGAGCAAGACAGCAAGCGCATTTCCAAACAGGCGGTTTATACCGTTCCCGTGGAAATCTCCGTGGTGCTCGG
CAAGGCCGTGCTGCGGGTCAATCAATTGCTGAAACTGGGCCGTGGCGCCGTCGTCGAACTGGAACAGAAGATCAGCGAAC
CGGTGGAGATCTACGCCAACGACATTCTTGTCGCCCGTGGCGAAGTGATCATCACCGATGGCGACAAGATCGGCGTGACC
CTGACCGAACTGGTCCGCTCCACCGCCCAGCACAACGGCTGA

Upstream 100 bases:

>100_bases
AAAATTAACCCTTTGGTGCTATGAGAAGACCATAGACCTTTCGCGGGGACGGAGCGCTTAGGCTCCCGGCCCGCCTTTCA
CGGGGTTCGGGCAACCGCCG

Downstream 100 bases:

>100_bases
TCTTTCCTGGGCTCCCCGCCCGTCACCGTCCCGATCAGCCTTTATTCCGAGGTCCGACGCCTTTTTGGCGACTCTTAGTC
GGACGCCTTCGTGGCGACTC

Product: surface presentation of antigens (SPOA) protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 93; Mature: 92

Protein sequence:

>93_residues
MADEQDSKRISKQAVYTVPVEISVVLGKAVLRVNQLLKLGRGAVVELEQKISEPVEIYANDILVARGEVIITDGDKIGVT
LTELVRSTAQHNG

Sequences:

>Translated_93_residues
MADEQDSKRISKQAVYTVPVEISVVLGKAVLRVNQLLKLGRGAVVELEQKISEPVEIYANDILVARGEVIITDGDKIGVT
LTELVRSTAQHNG
>Mature_92_residues
ADEQDSKRISKQAVYTVPVEISVVLGKAVLRVNQLLKLGRGAVVELEQKISEPVEIYANDILVARGEVIITDGDKIGVTL
TELVRSTAQHNG

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 10098; Mature: 9967

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADEQDSKRISKQAVYTVPVEISVVLGKAVLRVNQLLKLGRGAVVELEQKISEPVEIYAN
CCCCHHHHHHHHCCEEECCEEHHHHHHHHHHHHHHHHHHCCCCEEEHHHHCCCCHHHHHC
DILVARGEVIITDGDKIGVTLTELVRSTAQHNG
CEEEECCCEEEECCCCCCEEHHHHHHHHHCCCC
>Mature Secondary Structure 
ADEQDSKRISKQAVYTVPVEISVVLGKAVLRVNQLLKLGRGAVVELEQKISEPVEIYAN
CCCHHHHHHHHCCEEECCEEHHHHHHHHHHHHHHHHHHCCCCEEEHHHHCCCCHHHHHC
DILVARGEVIITDGDKIGVTLTELVRSTAQHNG
CEEEECCCEEEECCCCCCEEHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8002583; 11259647; 2315326; 1732219 [H]