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The map label for this gene is ycaK [C]

Identifier: 83594396

GI number: 83594396

Start: 3532429

End: 3533025

Strand: Direct

Name: ycaK [C]

Synonym: Rru_A3066

Alternate gene names: 83594396

Gene position: 3532429-3533025 (Clockwise)

Preceding gene: 83594395

Following gene: 83594397

Centisome position: 81.15

GC content: 63.82

Gene sequence:

>597_bases
ATGCATGCCCTTATCGTCGTTGCCCATCCCGACCAGACGTCCCTCACCCACGCCGTCGCCCAGCAGGTTGCGCAAGGGCT
CACCGCCGCCGCCGCCGGACATTCCGTCGAACTCGCCGATTTGGCGGCGGAAGGCTTCGATCCCCGCTTCACCGAGGCAG
ACCTTGCCTTCTTCCACAAGCGGGCCGATTCCCCGGTCGACATCGCCGCCGAGCACGCCCGCCTGGACCGCGCCGACGCG
CTGGTGCTGGTTTATCCCCTCTATTGGTGGTCCTTCCCCGCCCTGCTCAAGGGGTGGATCGACCGGGTGTTCACCAATGG
ATGGGCCTATGAGGAGGAGGAGGGTGGCAAGGTCATAAAGAAGCTGCGGCGCCTGGAGGTGCATTTGATCGCCATCGGTG
GCGCCGATCAGCGGACAATCGCCCGGCATGGCTATGTTGACGCGATGAAAACTCAGATCGACCACGGTATATTCGGCTAT
TGCGGCCCGCGCGTCGTAACATCGGACTTGATGCTTGCCTCTGATCCCGGTTTCCCCCGCGCCCATCTGGACGCCGCGGA
GGTCATCGGGAGCAGGATCTTTTCCTCCCGCTCGTGA

Upstream 100 bases:

>100_bases
TGCCCCTTCCGGGATCGAACGCCCCTCGATTCTCTCCCCTGGAGTTCCTACCATAAGTAGGTTACTAAAGGTAGGAAACC
GTCTTCTGGAGAGACCCGCC

Downstream 100 bases:

>100_bases
AACAAGGCCCCATGTCCCCTTCTTCCGATACGACACCCCGCCTTCGCCTGTCCCGGGCAGACCGCACCCGGCAGCTTCTC
GATGTGGCGTGGCGGCTGAT

Product: NAD(P)H dehydrogenase (quinone)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MHALIVVAHPDQTSLTHAVAQQVAQGLTAAAAGHSVELADLAAEGFDPRFTEADLAFFHKRADSPVDIAAEHARLDRADA
LVLVYPLYWWSFPALLKGWIDRVFTNGWAYEEEEGGKVIKKLRRLEVHLIAIGGADQRTIARHGYVDAMKTQIDHGIFGY
CGPRVVTSDLMLASDPGFPRAHLDAAEVIGSRIFSSRS

Sequences:

>Translated_198_residues
MHALIVVAHPDQTSLTHAVAQQVAQGLTAAAAGHSVELADLAAEGFDPRFTEADLAFFHKRADSPVDIAAEHARLDRADA
LVLVYPLYWWSFPALLKGWIDRVFTNGWAYEEEEGGKVIKKLRRLEVHLIAIGGADQRTIARHGYVDAMKTQIDHGIFGY
CGPRVVTSDLMLASDPGFPRAHLDAAEVIGSRIFSSRS
>Mature_198_residues
MHALIVVAHPDQTSLTHAVAQQVAQGLTAAAAGHSVELADLAAEGFDPRFTEADLAFFHKRADSPVDIAAEHARLDRADA
LVLVYPLYWWSFPALLKGWIDRVFTNGWAYEEEEGGKVIKKLRRLEVHLIAIGGADQRTIARHGYVDAMKTQIDHGIFGY
CGPRVVTSDLMLASDPGFPRAHLDAAEVIGSRIFSSRS

Specific function: Unknown

COG id: COG2249

COG function: function code R; Putative NADPH-quinone reductase (modulator of drug activity B)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NAD(P)H dehydrogenase (quinone) family [H]

Homologues:

Organism=Homo sapiens, GI4505415, Length=190, Percent_Identity=31.0526315789474, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI156564357, Length=192, Percent_Identity=28.125, Blast_Score=69, Evalue=2e-12,
Organism=Homo sapiens, GI70995396, Length=124, Percent_Identity=34.6774193548387, Blast_Score=64, Evalue=9e-11,
Organism=Escherichia coli, GI1787129, Length=144, Percent_Identity=36.1111111111111, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1786231, Length=107, Percent_Identity=35.5140186915888, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003680 [H]

Pfam domain/function: PF02525 Flavodoxin_2 [H]

EC number: 1.6.99.- [C]

Molecular weight: Translated: 21685; Mature: 21685

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHALIVVAHPDQTSLTHAVAQQVAQGLTAAAAGHSVELADLAAEGFDPRFTEADLAFFHK
CCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCHHHHHHHHH
RADSPVDIAAEHARLDRADALVLVYPLYWWSFPALLKGWIDRVFTNGWAYEEEEGGKVIK
HCCCCHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
KLRRLEVHLIAIGGADQRTIARHGYVDAMKTQIDHGIFGYCGPRVVTSDLMLASDPGFPR
HHHHHEEEEEEECCCCCHHHHHHCHHHHHHHHHCCCCCCCCCCHHHHHCEEEECCCCCCH
AHLDAAEVIGSRIFSSRS
HHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MHALIVVAHPDQTSLTHAVAQQVAQGLTAAAAGHSVELADLAAEGFDPRFTEADLAFFHK
CCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCHHHHHHHHH
RADSPVDIAAEHARLDRADALVLVYPLYWWSFPALLKGWIDRVFTNGWAYEEEEGGKVIK
HCCCCHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
KLRRLEVHLIAIGGADQRTIARHGYVDAMKTQIDHGIFGYCGPRVVTSDLMLASDPGFPR
HHHHHEEEEEEECCCCCHHHHHHCHHHHHHHHHCCCCCCCCCCHHHHHCEEEECCCCCCH
AHLDAAEVIGSRIFSSRS
HHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]