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The map label for this gene is yecD [C]

Identifier: 83594341

GI number: 83594341

Start: 3468426

End: 3469133

Strand: Direct

Name: yecD [C]

Synonym: Rru_A3011

Alternate gene names: 83594341

Gene position: 3468426-3469133 (Clockwise)

Preceding gene: 83594339

Following gene: 83594346

Centisome position: 79.68

GC content: 65.11

Gene sequence:

>708_bases
ATGTCCGACGCCCCGCAGCCCGCGTGGAAGACCGCCTTTTGCTCGTTCTATTACCAGGATGCGCCCCCGCCTGACGATCC
GCTTCTCGAAGCCGGCAAGCTCGCCCTGCTGGTCATCGATATGCAAAACGTCTATGTCAGCCGCCCCGATCGGGCCAGCC
TCGATGACGCCGGAAAGCGCGCTTACGACGCCTGGACGCCCTTTCACCAGCGCATGGGGGAGACGGTCATTCCGACCATC
GCCCGCCTGCAGGCGGCCTTTCGCGCTGGCGGCCATCCGGTGCTCTTCGCCCGCATCGCCTGCCAGACCACCGATGGCCG
CGACCGGTCGCTCAGCCAGAAACTGCCCGGCTGGAACAATCTGCTGCTACCCAAGGACGCCCCGGCCTCGCAGATCCTGG
CCGAGCTCAGCCCGCTGGGCGACGAGATCGTCGTGACCAAAACCACCGACAGCGCCCTGACGGGCACCAATCTGCGGCTG
ATCCTGACCAACCTCGGGGTGACCCAGGTGGTCTGCTGCGGCATCTTCACCGATCAATGCGTGTCGTCGACCGTGCGCAG
CTTGGCCGATGAAAGCGTTTCGGTGATCGTTGTCGAAGATGGCTGCGCCGCCGCCACCGACGCCCTGCACCGCCAGGAAC
TGGCGATCATCAACCGCATCTATTGCGCGGTGATGACCGCCGACGATGTCCTGGGCTATCTGCCGTAA

Upstream 100 bases:

>100_bases
TTTACGCCTCAAAATGTTGATCTTCCTACAATAATAGAGGCAACTCGGTCACGGAAATTCGCTATTCTGTGGGAAGTCCA
CTCTTCTGGAGCCCCCGCTG

Downstream 100 bases:

>100_bases
CCACGGACGGAAGGGCGCGCCCGGTCAGGCGCGCCGCTTCTGGACAAGGCGCATCACCAAGCCGCCCAGGATCAGGGCGC
CGGCGGCGGCCAGGGTGCTC

Product: isochorismatase hydrolase

Products: NA

Alternate protein names: Isochorismatase Family Protein; Nicotinamidase-Related Amidohydrolase; Isochorismatase Family Protein RutB; N-Carbamoylsarcosine Amidase Related Protein- Amidase; Amidase Related Nicotinamidase; Pyrimidine Utilization Protein B

Number of amino acids: Translated: 235; Mature: 234

Protein sequence:

>235_residues
MSDAPQPAWKTAFCSFYYQDAPPPDDPLLEAGKLALLVIDMQNVYVSRPDRASLDDAGKRAYDAWTPFHQRMGETVIPTI
ARLQAAFRAGGHPVLFARIACQTTDGRDRSLSQKLPGWNNLLLPKDAPASQILAELSPLGDEIVVTKTTDSALTGTNLRL
ILTNLGVTQVVCCGIFTDQCVSSTVRSLADESVSVIVVEDGCAAATDALHRQELAIINRIYCAVMTADDVLGYLP

Sequences:

>Translated_235_residues
MSDAPQPAWKTAFCSFYYQDAPPPDDPLLEAGKLALLVIDMQNVYVSRPDRASLDDAGKRAYDAWTPFHQRMGETVIPTI
ARLQAAFRAGGHPVLFARIACQTTDGRDRSLSQKLPGWNNLLLPKDAPASQILAELSPLGDEIVVTKTTDSALTGTNLRL
ILTNLGVTQVVCCGIFTDQCVSSTVRSLADESVSVIVVEDGCAAATDALHRQELAIINRIYCAVMTADDVLGYLP
>Mature_234_residues
SDAPQPAWKTAFCSFYYQDAPPPDDPLLEAGKLALLVIDMQNVYVSRPDRASLDDAGKRAYDAWTPFHQRMGETVIPTIA
RLQAAFRAGGHPVLFARIACQTTDGRDRSLSQKLPGWNNLLLPKDAPASQILAELSPLGDEIVVTKTTDSALTGTNLRLI
LTNLGVTQVVCCGIFTDQCVSSTVRSLADESVSVIVVEDGCAAATDALHRQELAIINRIYCAVMTADDVLGYLP

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081992, Length=173, Percent_Identity=28.9017341040462, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25407; Mature: 25276

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDAPQPAWKTAFCSFYYQDAPPPDDPLLEAGKLALLVIDMQNVYVSRPDRASLDDAGKR
CCCCCCCHHHHHHHHHEECCCCCCCCHHHCCCCEEEEEEEECHHEECCCCCCCCCHHHHH
AYDAWTPFHQRMGETVIPTIARLQAAFRAGGHPVLFARIACQTTDGRDRSLSQKLPGWNN
HHHHCCHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCHHHHHCCCCCC
LLLPKDAPASQILAELSPLGDEIVVTKTTDSALTGTNLRLILTNLGVTQVVCCGIFTDQC
EECCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHH
VSSTVRSLADESVSVIVVEDGCAAATDALHRQELAIINRIYCAVMTADDVLGYLP
HHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHEECHHHHHCCCC
>Mature Secondary Structure 
SDAPQPAWKTAFCSFYYQDAPPPDDPLLEAGKLALLVIDMQNVYVSRPDRASLDDAGKR
CCCCCCHHHHHHHHHEECCCCCCCCHHHCCCCEEEEEEEECHHEECCCCCCCCCHHHHH
AYDAWTPFHQRMGETVIPTIARLQAAFRAGGHPVLFARIACQTTDGRDRSLSQKLPGWNN
HHHHCCHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCHHHHHCCCCCC
LLLPKDAPASQILAELSPLGDEIVVTKTTDSALTGTNLRLILTNLGVTQVVCCGIFTDQC
EECCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHH
VSSTVRSLADESVSVIVVEDGCAAATDALHRQELAIINRIYCAVMTADDVLGYLP
HHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHEECHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA