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The map label for this gene is crtD [H]

Identifier: 83594314

GI number: 83594314

Start: 3435940

End: 3437451

Strand: Direct

Name: crtD [H]

Synonym: Rru_A2984

Alternate gene names: 83594314

Gene position: 3435940-3437451 (Clockwise)

Preceding gene: 83594303

Following gene: 83594315

Centisome position: 78.94

GC content: 71.1

Gene sequence:

>1512_bases
GTGAAGACCCAGCACGTGGTCGTGGTAGGCGCCGGCATGGGCGGACTGGCGGCGGCCATCGATCTCGCATCGCGTGGCCT
GCGCGTCACCGTCCTTGAGCGATCCCCGTCGCCCGGCGGCAAGATGCGCGAGATCGCCGTCGGCGGCGCCCGGCTCGACG
CCGGGCCGACGGTTTTCACCATGCGCTGGGTGTTCGAGGAGCTCTTCGCCGACGCCGGGGCCTCGCTTGGCGAGTCGCTC
CGTTTGCGCGCCGCCGAGGTGCTGGCCCGCCACACCTGGGGCGACGGCGCGCCCTTCGATCTGTTCGCCGACGCCGCGCG
TTCGACCGAGGCGGTGGGCGAGCTGGCCGGGGCGGCCGAAGCCAAGCGCTTCGTCGCCTTCTGCGCCCGGGCGCGCGGCA
TCTGGCAGGCCTTGGAAGGCCCCTTCATTCGCGGCCAGCGGCCAAGTCCGGGCGAATTGGTGCGCCGCTCCGGGTTGTCG
GGCCTGTCGGGCCTCGCCCGCATCTCGCCCTTCACCTTGCTGTGGAAGGCCCTGGGCGAGCATTTTCACGATCCCCGGCT
GCGCCAGCTTTTCGGCCGCTATGCCACCTATTGCGGCTCCTCGCCCTTTCTCGCCCCGGCGACCCTGATGCTGGTCGCCC
ATGTCGAGCAGCAAGGGGTGTGGATGGTCGACGGCGGCATGCACCAGATCGCCCGGGCCATGGCCGATCTGGCGACGGCC
AAGGGCGCGACGTTTCGCTATTCCACCACCGCCGAAAGCGTGCTGGTGGAAAACGGCAAGGTCGGCGGCCTTATCCTTCA
GGGCGGCGAACGTCTCGCCGCCGACATCGTTCTCATCAACGGCGACGCGGCGGCCCTGGCCGCGCGCTGTTTCGGACCTC
AGGTGGCTGCGGCGGTTCCGCCGGTGCCGCCCACCGCGCGCTCTCTCTCCGCGGTCACCTGGGGCCTGTTGGCGGAGGCG
GAGGGGTTTCCCCTGCTGCGCCACAGCGTCTTCTTCGGCAATGATTATCCGGGGGAATTCCGCGACATCTTCACCCACGG
CCGTCTGCCCAGCTCCCCCACGGTCTATGTCTGCGCCCAGGACCGGGGCGACAAGGCCCCCACCGTCGGCCCGAGCGGGC
CCCGCCCCGAACGGCTGCTGGTTCTGGTCAACGCCCCCGCCCGCGGGGATCTTTCCTTTCCCGATGCCATGGAGCTCGAC
ACATGCACCGCCCGGACCTTCGCCTTCCTGGAACGTTGCGGCCTAACGCTGCGCCGGACGCCGGAGGCGACCCGGGTAAC
GACTCCGGCCGACTTCAACAGCCTGTTCCCGGCGACGGGGGGAGCGCTCTACGGCCGGGCGTCGCACGGGTGGTCGGCGA
CCTTCGACCGGCCGGGGGCGAAAACGGCGATGCCCGGCCTCTATCTGGCGGGGGGCAGCGTCCATCCGGGACCGGGGGTG
CCGATGGCGGCCTTATCGGGACGGTTGGCGGCCCAGGCGGTTCTGGCGGACCTGACTTCGCGCGGCCGGTAG

Upstream 100 bases:

>100_bases
GACATGTCGATTGTCAACAAAAGTTGCCACTCGAAACTGTAAATCAGCATGGACATTTGGTAGGCTCGAGTCAATGGCGA
TCGACAAAGGATAAAGGCTT

Downstream 100 bases:

>100_bases
CCCCGGGCGGCTATGCCTGGTGGTATGTCGACGCCTTCAGCGACGACGGCGCCCAGGCCTTCACCCTGATCGCCTTCGTC
GGCAGCGTCTTTTCGCCCTA

Product: CrtD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 503; Mature: 503

Protein sequence:

>503_residues
MKTQHVVVVGAGMGGLAAAIDLASRGLRVTVLERSPSPGGKMREIAVGGARLDAGPTVFTMRWVFEELFADAGASLGESL
RLRAAEVLARHTWGDGAPFDLFADAARSTEAVGELAGAAEAKRFVAFCARARGIWQALEGPFIRGQRPSPGELVRRSGLS
GLSGLARISPFTLLWKALGEHFHDPRLRQLFGRYATYCGSSPFLAPATLMLVAHVEQQGVWMVDGGMHQIARAMADLATA
KGATFRYSTTAESVLVENGKVGGLILQGGERLAADIVLINGDAAALAARCFGPQVAAAVPPVPPTARSLSAVTWGLLAEA
EGFPLLRHSVFFGNDYPGEFRDIFTHGRLPSSPTVYVCAQDRGDKAPTVGPSGPRPERLLVLVNAPARGDLSFPDAMELD
TCTARTFAFLERCGLTLRRTPEATRVTTPADFNSLFPATGGALYGRASHGWSATFDRPGAKTAMPGLYLAGGSVHPGPGV
PMAALSGRLAAQAVLADLTSRGR

Sequences:

>Translated_503_residues
MKTQHVVVVGAGMGGLAAAIDLASRGLRVTVLERSPSPGGKMREIAVGGARLDAGPTVFTMRWVFEELFADAGASLGESL
RLRAAEVLARHTWGDGAPFDLFADAARSTEAVGELAGAAEAKRFVAFCARARGIWQALEGPFIRGQRPSPGELVRRSGLS
GLSGLARISPFTLLWKALGEHFHDPRLRQLFGRYATYCGSSPFLAPATLMLVAHVEQQGVWMVDGGMHQIARAMADLATA
KGATFRYSTTAESVLVENGKVGGLILQGGERLAADIVLINGDAAALAARCFGPQVAAAVPPVPPTARSLSAVTWGLLAEA
EGFPLLRHSVFFGNDYPGEFRDIFTHGRLPSSPTVYVCAQDRGDKAPTVGPSGPRPERLLVLVNAPARGDLSFPDAMELD
TCTARTFAFLERCGLTLRRTPEATRVTTPADFNSLFPATGGALYGRASHGWSATFDRPGAKTAMPGLYLAGGSVHPGPGV
PMAALSGRLAAQAVLADLTSRGR
>Mature_503_residues
MKTQHVVVVGAGMGGLAAAIDLASRGLRVTVLERSPSPGGKMREIAVGGARLDAGPTVFTMRWVFEELFADAGASLGESL
RLRAAEVLARHTWGDGAPFDLFADAARSTEAVGELAGAAEAKRFVAFCARARGIWQALEGPFIRGQRPSPGELVRRSGLS
GLSGLARISPFTLLWKALGEHFHDPRLRQLFGRYATYCGSSPFLAPATLMLVAHVEQQGVWMVDGGMHQIARAMADLATA
KGATFRYSTTAESVLVENGKVGGLILQGGERLAADIVLINGDAAALAARCFGPQVAAAVPPVPPTARSLSAVTWGLLAEA
EGFPLLRHSVFFGNDYPGEFRDIFTHGRLPSSPTVYVCAQDRGDKAPTVGPSGPRPERLLVLVNAPARGDLSFPDAMELD
TCTARTFAFLERCGLTLRRTPEATRVTTPADFNSLFPATGGALYGRASHGWSATFDRPGAKTAMPGLYLAGGSVHPGPGV
PMAALSGRLAAQAVLADLTSRGR

Specific function: Converts hydroxyneurosporene to demethylspheroidene or methoxyneurosporene to spheroidene [H]

COG id: COG1233

COG function: function code Q; Phytoene dehydrogenase and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid/retinoid oxidoreductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002937
- InterPro:   IPR008150
- InterPro:   IPR014105 [H]

Pfam domain/function: PF01593 Amino_oxidase [H]

EC number: NA

Molecular weight: Translated: 52938; Mature: 52938

Theoretical pI: Translated: 9.25; Mature: 9.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTQHVVVVGAGMGGLAAAIDLASRGLRVTVLERSPSPGGKMREIAVGGARLDAGPTVFT
CCCCEEEEEECCCCHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEEECCCEECCCCCEEH
MRWVFEELFADAGASLGESLRLRAAEVLARHTWGDGAPFDLFADAARSTEAVGELAGAAE
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
AKRFVAFCARARGIWQALEGPFIRGQRPSPGELVRRSGLSGLSGLARISPFTLLWKALGE
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
HFHDPRLRQLFGRYATYCGSSPFLAPATLMLVAHVEQQGVWMVDGGMHQIARAMADLATA
HCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHH
KGATFRYSTTAESVLVENGKVGGLILQGGERLAADIVLINGDAAALAARCFGPQVAAAVP
CCCEEEECCCHHHHEECCCCCCEEEEECCCEEEEEEEEECCCHHHHHHHHCCCHHHHCCC
PVPPTARSLSAVTWGLLAEAEGFPLLRHSVFFGNDYPGEFRDIFTHGRLPSSPTVYVCAQ
CCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHCCCCCCCCEEEEEEC
DRGDKAPTVGPSGPRPERLLVLVNAPARGDLSFPDAMELDTCTARTFAFLERCGLTLRRT
CCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEECC
PEATRVTTPADFNSLFPATGGALYGRASHGWSATFDRPGAKTAMPGLYLAGGSVHPGPGV
CCCCEECCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC
PMAALSGRLAAQAVLADLTSRGR
CHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKTQHVVVVGAGMGGLAAAIDLASRGLRVTVLERSPSPGGKMREIAVGGARLDAGPTVFT
CCCCEEEEEECCCCHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEEECCCEECCCCCEEH
MRWVFEELFADAGASLGESLRLRAAEVLARHTWGDGAPFDLFADAARSTEAVGELAGAAE
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
AKRFVAFCARARGIWQALEGPFIRGQRPSPGELVRRSGLSGLSGLARISPFTLLWKALGE
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
HFHDPRLRQLFGRYATYCGSSPFLAPATLMLVAHVEQQGVWMVDGGMHQIARAMADLATA
HCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHH
KGATFRYSTTAESVLVENGKVGGLILQGGERLAADIVLINGDAAALAARCFGPQVAAAVP
CCCEEEECCCHHHHEECCCCCCEEEEECCCEEEEEEEEECCCHHHHHHHHCCCHHHHCCC
PVPPTARSLSAVTWGLLAEAEGFPLLRHSVFFGNDYPGEFRDIFTHGRLPSSPTVYVCAQ
CCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHCCCCCCCCEEEEEEC
DRGDKAPTVGPSGPRPERLLVLVNAPARGDLSFPDAMELDTCTARTFAFLERCGLTLRRT
CCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEECC
PEATRVTTPADFNSLFPATGGALYGRASHGWSATFDRPGAKTAMPGLYLAGGSVHPGPGV
CCCCEECCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC
PMAALSGRLAAQAVLADLTSRGR
CHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2747617; 2144293 [H]