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The map label for this gene is fliR [H]

Identifier: 83594154

GI number: 83594154

Start: 3256988

End: 3257749

Strand: Reverse

Name: fliR [H]

Synonym: Rru_A2822

Alternate gene names: 83594154

Gene position: 3257749-3256988 (Counterclockwise)

Preceding gene: 83594155

Following gene: 83594153

Centisome position: 74.84

GC content: 60.76

Gene sequence:

>762_bases
GTGCTCGACGCTTTTTTAAACCAGAACCTTTTTCATTTTCTGCTGGTCTTCGTGCGGCTGGGCACGGCCATGCTGGTTCT
GCCCGGGCTGTCGTCCACCTATGTTTCGGTCAATATCCGCATCCTGCTGGCCGTGACCATTACCCTGGTCGCCCTGCCAA
CGGTGGGAGCGGCCCTGCCGCCCGCTCCCGATAACACGGCTTTCCTGGTGCTGCTGATCGCCGTCGAGGCGACGATCGGG
GTGTTTTTGGGCATGATGGCGCAGTTCCTGCTGGTGCCGGTCAGTTTCGCCGGCAATATCATGGGCTTTTCCACCGGCCT
GATGATGGCCCAGGCCTTCGATCCGACCACCGCCCAGCAAAGCGCCCTGATCGCCGGCTTTCTGGGCGAGGTGGCGATGG
TGATGGTCTTCGTCACCGGCATGCACCATTTGATGATCGAGGCGGTGGTCAACAGCTACGACGCCTTTCCCCCGGGCCAG
ATGCCCGATACTGGGGATATGGTGCAGCTGCTGGTCACCATCTTGTCCTCGGGCTTTCGCCTGGGGCTGCAGCTGGCCGC
CCCCTTCATCATCTATGCCATCATCTTCAATGCCACGCTGGGGGTGATCGCCCGGCTGATGCCCCAGCTCAATGTGCTGT
TCGTGGCCATGCCCGCCCAGATCCTGTTCGGTTTGGCCCTGTTGATGACCACCGTGCCCTTCCTGATCTATTCTTTCCTG
GGGCATTTCGAGCGCGGGCTGATCAATCTGGCGATGCCTTGA

Upstream 100 bases:

>100_bases
CGCTCTAATCTATTGAATCTAGATCAAAGAGTCTGGGTTAAACGATTCCCCCTTTAAGAGGATCTCGGTTAACGCAGTGT
GATCTAGTCGCGGGGACGCC

Downstream 100 bases:

>100_bases
GACGCCTTAAGGCGTCTTGAAGGGGAGCCGCGTTTCCTGAGACCAGCCACGAAAGGGCGTCATGGCCGACGACGACAAGG
ACTCCAAGACCGAGGACCCC

Product: flagellar biosynthesis protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MLDAFLNQNLFHFLLVFVRLGTAMLVLPGLSSTYVSVNIRILLAVTITLVALPTVGAALPPAPDNTAFLVLLIAVEATIG
VFLGMMAQFLLVPVSFAGNIMGFSTGLMMAQAFDPTTAQQSALIAGFLGEVAMVMVFVTGMHHLMIEAVVNSYDAFPPGQ
MPDTGDMVQLLVTILSSGFRLGLQLAAPFIIYAIIFNATLGVIARLMPQLNVLFVAMPAQILFGLALLMTTVPFLIYSFL
GHFERGLINLAMP

Sequences:

>Translated_253_residues
MLDAFLNQNLFHFLLVFVRLGTAMLVLPGLSSTYVSVNIRILLAVTITLVALPTVGAALPPAPDNTAFLVLLIAVEATIG
VFLGMMAQFLLVPVSFAGNIMGFSTGLMMAQAFDPTTAQQSALIAGFLGEVAMVMVFVTGMHHLMIEAVVNSYDAFPPGQ
MPDTGDMVQLLVTILSSGFRLGLQLAAPFIIYAIIFNATLGVIARLMPQLNVLFVAMPAQILFGLALLMTTVPFLIYSFL
GHFERGLINLAMP
>Mature_253_residues
MLDAFLNQNLFHFLLVFVRLGTAMLVLPGLSSTYVSVNIRILLAVTITLVALPTVGAALPPAPDNTAFLVLLIAVEATIG
VFLGMMAQFLLVPVSFAGNIMGFSTGLMMAQAFDPTTAQQSALIAGFLGEVAMVMVFVTGMHHLMIEAVVNSYDAFPPGQ
MPDTGDMVQLLVTILSSGFRLGLQLAAPFIIYAIIFNATLGVIARLMPQLNVLFVAMPAQILFGLALLMTTVPFLIYSFL
GHFERGLINLAMP

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 27082; Mature: 27082

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.7 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
6.7 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHCHHCCCCC
>Mature Secondary Structure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HHHHHCHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7814323; 11259647 [H]