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The map label for this gene is yibD [C]

Identifier: 83594069

GI number: 83594069

Start: 3166462

End: 3167910

Strand: Reverse

Name: yibD [C]

Synonym: Rru_A2737

Alternate gene names: 83594069

Gene position: 3167910-3166462 (Counterclockwise)

Preceding gene: 83594070

Following gene: 83594062

Centisome position: 72.78

GC content: 68.6

Gene sequence:

>1449_bases
ATGACCGTCATCGCGCTGCGTCATCTGGGGCCGGCGGAGCGCAAGAGCTTCGCCCGCCATCTGGCCGGGGGGGATTTTCC
GGGCAAAGGGGCGTGGGACGACGGGACGGTCGTGCTTGATCGCGTTCTTGACGGGCTTGGCGATGAGGCGGGGCGCGCCC
TGATCGAGGGCGCTTTGGCGAAGGCGTCCCGGATGGTGGTGGTCACCCTGGGTGGCGAAGCCGCCGCGCGGTGGACGCCC
GAGGTCCTGGGGCCGGCCTTCGTTTATCTGCTGGGCGAGGCGATCGATGCGGACTCGCCGGCGGTGGCCCTGGCTTTTCT
TGATGGCCCGGGACGGCCGCGCCTTTTCGCGCCAAGGTTTTCCGTCATGGTCCCGGTCTATAATCACCGGGATCTCATCG
GGGCCTGTCTGGACTCGATCGCCGCCCAAAGTTGGCCGCTGTGGGAGGCGGTGGTGGTCGATGATGGCTCGACCGATGGG
GTGGCGACGCTCCTGACTGAGCGGGCGGCGGCCGATCCGCGCCTGCGCTGGAGCAGCCAAGCCAATGGCGGCACCGGGGC
GGCGCTGAACGCGTGCTTGGCCATGGCCCGGGAGGAGTGGATCGCCTGGCTGTCCAGCGATGATCTGTTCGCGCCCGACA
AACTGGCCGCCCATGCCGCCCTGCTGCGTCGCGACGGTTTGGCGCCCGCCTTTCACCATACGGCGGTGATCCGGCGCAAT
GACGCCGGGGAAGAGCAGGTGGTGGCGCCCCTGGGGCCGCTGATGACGGGATCGGCGGGACTGCGTCGGCTGGCGATGAC
CTCGGTCAACCTGATCCAGGGGATCTCGATCGTCGTCCATCGCGATCTCTTCGCCCAGACGGCGGGCTTTGATCCCCGCA
ACCGCTTCACCCAGGATTATGCGATGTGGGTTCGGCTGATGGAGCGGACCGATCCGGTCTATCTGCCCTTGGTGACGGCG
GTGACCCGGGTTGGCGCCGCCCAGACCACGGCGCGCCATTACCAGCGCACCCGGGCCGAGGCCATCGCCGCCATCCTGGG
CGCCCTGCGCGATTTCTCGGCCGGAGCGCCGGATGATAGGGAAGCGCGGCTCGAGGCGGTGGCGGCGCTGGTCATGCTGG
CGTCTTCGCCCCACGGCTTTCTCGCCCGCTATGGCCTTCAGGGGTGGTATGTGGCGCGCGCCATGGGATTGGCGGCTGAG
GCCAAGGTCTTGGGCGCGACCTTCGCCGATGTGTCGGCGCGGCTGGGCCCGTGGTCGGTGGGCCATATCCACGATCCCCA
GGCCATGGGCCATCTGGCGATGATCGAAAGCGTTTTCCGCGAGGACAAGGCCGCCGCGCCGATCGATCCCTTTCGCATTC
TGACCCGGATGCTGATCTCGCCGACCATCCCGGCCGATCTGGCCGAGGCGATCACCGGCTTTCTGCGGGGCGATCTCCCC
CAGCCATAG

Upstream 100 bases:

>100_bases
CTCTTGGCCTGACCCTGGCCGGGGTGGATGTCTATCGCCAGCCGGCCTCCGGGGCGATGAAGACCTTGATGGTTGTCGAT
CGCTTGCCGGAGAAGGAAGC

Downstream 100 bases:

>100_bases
GGCGCTTACAACCCCGTCAACGCCAATTCGGAGCGGGGGAGGAGGGCGGCCAGCGGGGCGAGGGCCTGGGGCTCGCGGGC
CAGAAACAGCACAAGATCCT

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 482; Mature: 481

Protein sequence:

>482_residues
MTVIALRHLGPAERKSFARHLAGGDFPGKGAWDDGTVVLDRVLDGLGDEAGRALIEGALAKASRMVVVTLGGEAAARWTP
EVLGPAFVYLLGEAIDADSPAVALAFLDGPGRPRLFAPRFSVMVPVYNHRDLIGACLDSIAAQSWPLWEAVVVDDGSTDG
VATLLTERAAADPRLRWSSQANGGTGAALNACLAMAREEWIAWLSSDDLFAPDKLAAHAALLRRDGLAPAFHHTAVIRRN
DAGEEQVVAPLGPLMTGSAGLRRLAMTSVNLIQGISIVVHRDLFAQTAGFDPRNRFTQDYAMWVRLMERTDPVYLPLVTA
VTRVGAAQTTARHYQRTRAEAIAAILGALRDFSAGAPDDREARLEAVAALVMLASSPHGFLARYGLQGWYVARAMGLAAE
AKVLGATFADVSARLGPWSVGHIHDPQAMGHLAMIESVFREDKAAAPIDPFRILTRMLISPTIPADLAEAITGFLRGDLP
QP

Sequences:

>Translated_482_residues
MTVIALRHLGPAERKSFARHLAGGDFPGKGAWDDGTVVLDRVLDGLGDEAGRALIEGALAKASRMVVVTLGGEAAARWTP
EVLGPAFVYLLGEAIDADSPAVALAFLDGPGRPRLFAPRFSVMVPVYNHRDLIGACLDSIAAQSWPLWEAVVVDDGSTDG
VATLLTERAAADPRLRWSSQANGGTGAALNACLAMAREEWIAWLSSDDLFAPDKLAAHAALLRRDGLAPAFHHTAVIRRN
DAGEEQVVAPLGPLMTGSAGLRRLAMTSVNLIQGISIVVHRDLFAQTAGFDPRNRFTQDYAMWVRLMERTDPVYLPLVTA
VTRVGAAQTTARHYQRTRAEAIAAILGALRDFSAGAPDDREARLEAVAALVMLASSPHGFLARYGLQGWYVARAMGLAAE
AKVLGATFADVSARLGPWSVGHIHDPQAMGHLAMIESVFREDKAAAPIDPFRILTRMLISPTIPADLAEAITGFLRGDLP
QP
>Mature_481_residues
TVIALRHLGPAERKSFARHLAGGDFPGKGAWDDGTVVLDRVLDGLGDEAGRALIEGALAKASRMVVVTLGGEAAARWTPE
VLGPAFVYLLGEAIDADSPAVALAFLDGPGRPRLFAPRFSVMVPVYNHRDLIGACLDSIAAQSWPLWEAVVVDDGSTDGV
ATLLTERAAADPRLRWSSQANGGTGAALNACLAMAREEWIAWLSSDDLFAPDKLAAHAALLRRDGLAPAFHHTAVIRRND
AGEEQVVAPLGPLMTGSAGLRRLAMTSVNLIQGISIVVHRDLFAQTAGFDPRNRFTQDYAMWVRLMERTDPVYLPLVTAV
TRVGAAQTTARHYQRTRAEAIAAILGALRDFSAGAPDDREARLEAVAALVMLASSPHGFLARYGLQGWYVARAMGLAAEA
KVLGATFADVSARLGPWSVGHIHDPQAMGHLAMIESVFREDKAAAPIDPFRILTRMLISPTIPADLAEAITGFLRGDLPQ
P

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790044, Length=94, Percent_Identity=31.9148936170213, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 51473; Mature: 51341

Theoretical pI: Translated: 6.38; Mature: 6.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVIALRHLGPAERKSFARHLAGGDFPGKGAWDDGTVVLDRVLDGLGDEAGRALIEGALA
CEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHH
KASRMVVVTLGGEAAARWTPEVLGPAFVYLLGEAIDADSPAVALAFLDGPGRPRLFAPRF
HCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEECCCC
SVMVPVYNHRDLIGACLDSIAAQSWPLWEAVVVDDGSTDGVATLLTERAAADPRLRWSSQ
EEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCEECCC
ANGGTGAALNACLAMAREEWIAWLSSDDLFAPDKLAAHAALLRRDGLAPAFHHTAVIRRN
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHEEEEEC
DAGEEQVVAPLGPLMTGSAGLRRLAMTSVNLIQGISIVVHRDLFAQTAGFDPRNRFTQDY
CCCCCCEECCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
AMWVRLMERTDPVYLPLVTAVTRVGAAQTTARHYQRTRAEAIAAILGALRDFSAGAPDDR
HHHHHHHHHCCCEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
EARLEAVAALVMLASSPHGFLARYGLQGWYVARAMGLAAEAKVLGATFADVSARLGPWSV
HHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
GHIHDPQAMGHLAMIESVFREDKAAAPIDPFRILTRMLISPTIPADLAEAITGFLRGDLP
CCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCC
QP
CC
>Mature Secondary Structure 
TVIALRHLGPAERKSFARHLAGGDFPGKGAWDDGTVVLDRVLDGLGDEAGRALIEGALA
EEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHH
KASRMVVVTLGGEAAARWTPEVLGPAFVYLLGEAIDADSPAVALAFLDGPGRPRLFAPRF
HCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEECCCC
SVMVPVYNHRDLIGACLDSIAAQSWPLWEAVVVDDGSTDGVATLLTERAAADPRLRWSSQ
EEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCEECCC
ANGGTGAALNACLAMAREEWIAWLSSDDLFAPDKLAAHAALLRRDGLAPAFHHTAVIRRN
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHEEEEEC
DAGEEQVVAPLGPLMTGSAGLRRLAMTSVNLIQGISIVVHRDLFAQTAGFDPRNRFTQDY
CCCCCCEECCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
AMWVRLMERTDPVYLPLVTAVTRVGAAQTTARHYQRTRAEAIAAILGALRDFSAGAPDDR
HHHHHHHHHCCCEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
EARLEAVAALVMLASSPHGFLARYGLQGWYVARAMGLAAEAKVLGATFADVSARLGPWSV
HHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
GHIHDPQAMGHLAMIESVFREDKAAAPIDPFRILTRMLISPTIPADLAEAITGFLRGDLP
CCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCC
QP
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA