Click here to switch to the map view.

The map label for this gene is rfbC [H]

Identifier: 83594065

GI number: 83594065

Start: 3160457

End: 3162208

Strand: Direct

Name: rfbC [H]

Synonym: Rru_A2733

Alternate gene names: 83594065

Gene position: 3160457-3162208 (Clockwise)

Preceding gene: 83594064

Following gene: 83594066

Centisome position: 72.61

GC content: 66.89

Gene sequence:

>1752_bases
ATGGCCGCTGACGAGTCCTACCCGTCCGTCAAAGAGAGGGCCTTCTTCCAGGGTTTGCCCTTCGACTATGCCGTTGTCTT
TGATAACGCCCTGATCGACCGCCTGTTCAGCCGGCTTCGCCAGGAACGCGCCCTGGTCGAGGATGGCCTGCTCGCCCGTC
CCGATCACCGGCCCTGGCGCCTGGGCGCCCTGATCACCGAAGCCGATACCCTGGATCGGCGGTTGAGCGAACAGATCCGG
TGCCTAAGCGGGCAAAGCCTGCCCGTCGCCTCGATCGCCCTGGTCACGGCGACGACCGAGGCGCGCGAGGCGGTATCGCT
GTGGGCCAGCGTGACCTGCCCACCCAACGTCGTCGTCACCCCCGATCCCCGCGCCTGGATGGCCGAAGCAGATCTCGACC
TTGTCGTCGTCTTCGCCCCGGGCGCCCTGGCCCACCCCGGGCTGTTCGCCGCCCTTGGCCGCGCCCTGCAGCGCGACGGG
GCCGACTTCGCCGTGTGGAATCACCTTCTGGTGCGCCGGCGCGCCGAGGCGCCCGGCCAGGACATCACCTATCTGCGTTG
CCCCGATCCAACACGACAGCCGGTCGCCCTGGCCCATATGGAAGCCGCCGGCCCGGCTTGGGCGGCGACGCCCAGGCTTT
TTGAGACAATCAAGGGCGATCTTGGCAAGGCGTTGATCGGCATGGCCCGTCATCCGCTGTCGATCGCCCTCTTGCGCGGC
AAGCCAAAGGTCGTGCGGCTGAACGAGTTCCTTGGCGCCTGTCGGGTCGACAGCCTGGGCACCCCGCCCTGGCCCCGCCA
ATCCGCCCTTGTCGAAGCCTATGGGGCCGCCCTGGAGGACGAGACCTTCCGTCTGGAGATCGACCCCGCCCATCCCACCC
AACCGATCCGCCTAACACCGCGACGGCGCGCCCACAGCATCGATATCGTTATCAATTTCCGCGACAAGCCCGAATTGACC
CTGGCGGCGATGGGCTCGATCTACGCCCAGACCACCACCGCCCGCGTCAGCTTGTTCCTGATCGACAACCAGTCGACCCC
CGCCGCCCGCGCCGCGATCGACGCCGAGGCCGCCCGCGCCCCCGCCGGGATCGCCGTCCGGGTGCTGTCCTATGACCGGC
CCTTCAATCACAGCGCCCAGACCAATCTGGGTGCGGCGGCTGGAAACGGAGAGGCGCTGGTCTTCATGAGCAATGACTGT
GCCCTGGTCGATCCCGGCGCCCTGGACGAAATGGCGGCCTGGGCCCTGGCCCCCGGGGTGGGCACGGTCGGCGTCAGGCT
GGAAACCGCCGAGGGTCGGCTGGCCTGTTCGGGGATCTGCGCGCTCTATCCCGATCACGATTTCCACCCGATCGTCGCCG
AGGGCTTCGATCAGCTTGGCGCCGGACTGAACCGCGAGACCTTCGCCAATACCTTCGCCTGCGCCTGCCTTGCCCGCGCC
GTGTTCAGGCAAGCCGGCCCGCTCGACGCCATCGGCTTTCCCATCGGCCTGAACGATGTGGACTATTGCCTGAGGCTACG
CGAGCGGGGCCTGCGCCATCTCTATCTTGGCGCCTTTCTCGCCCGCCATCAGGCCCTGGGCAGCCGCCCGGCCAGCGACG
ATGGCGCCCAAAGCGCCTTCCTGCGCCAGACCTATGGGCATTTGCTGTTCGATAAGGAATACATGTTGGAATATGATTTT
CTCCGTCAGTTCACGGCGGCGAAACTGCGCCAAGACATCCGTTCCCAACGAGACAAAACCACAACCGTCTGA

Upstream 100 bases:

>100_bases
AGTCTTGAACCCGGCGGAAAAGCAGCCGACGATGGACGCTTGGTAAGGTCATGGCCCCAGAACGGTGGTTTTGCCTTGCC
GGCTGACTGGAATCATCTCG

Downstream 100 bases:

>100_bases
ACGAAAATTCATCCCGATATTTTCCGACGGCTTTGTTCTATTATTGACTATTCCTAACAAGATCCGGGCTGATCGCTTTT
TTTTCAGGAAGAAGGGAGGG

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 583; Mature: 582

Protein sequence:

>583_residues
MAADESYPSVKERAFFQGLPFDYAVVFDNALIDRLFSRLRQERALVEDGLLARPDHRPWRLGALITEADTLDRRLSEQIR
CLSGQSLPVASIALVTATTEAREAVSLWASVTCPPNVVVTPDPRAWMAEADLDLVVVFAPGALAHPGLFAALGRALQRDG
ADFAVWNHLLVRRRAEAPGQDITYLRCPDPTRQPVALAHMEAAGPAWAATPRLFETIKGDLGKALIGMARHPLSIALLRG
KPKVVRLNEFLGACRVDSLGTPPWPRQSALVEAYGAALEDETFRLEIDPAHPTQPIRLTPRRRAHSIDIVINFRDKPELT
LAAMGSIYAQTTTARVSLFLIDNQSTPAARAAIDAEAARAPAGIAVRVLSYDRPFNHSAQTNLGAAAGNGEALVFMSNDC
ALVDPGALDEMAAWALAPGVGTVGVRLETAEGRLACSGICALYPDHDFHPIVAEGFDQLGAGLNRETFANTFACACLARA
VFRQAGPLDAIGFPIGLNDVDYCLRLRERGLRHLYLGAFLARHQALGSRPASDDGAQSAFLRQTYGHLLFDKEYMLEYDF
LRQFTAAKLRQDIRSQRDKTTTV

Sequences:

>Translated_583_residues
MAADESYPSVKERAFFQGLPFDYAVVFDNALIDRLFSRLRQERALVEDGLLARPDHRPWRLGALITEADTLDRRLSEQIR
CLSGQSLPVASIALVTATTEAREAVSLWASVTCPPNVVVTPDPRAWMAEADLDLVVVFAPGALAHPGLFAALGRALQRDG
ADFAVWNHLLVRRRAEAPGQDITYLRCPDPTRQPVALAHMEAAGPAWAATPRLFETIKGDLGKALIGMARHPLSIALLRG
KPKVVRLNEFLGACRVDSLGTPPWPRQSALVEAYGAALEDETFRLEIDPAHPTQPIRLTPRRRAHSIDIVINFRDKPELT
LAAMGSIYAQTTTARVSLFLIDNQSTPAARAAIDAEAARAPAGIAVRVLSYDRPFNHSAQTNLGAAAGNGEALVFMSNDC
ALVDPGALDEMAAWALAPGVGTVGVRLETAEGRLACSGICALYPDHDFHPIVAEGFDQLGAGLNRETFANTFACACLARA
VFRQAGPLDAIGFPIGLNDVDYCLRLRERGLRHLYLGAFLARHQALGSRPASDDGAQSAFLRQTYGHLLFDKEYMLEYDF
LRQFTAAKLRQDIRSQRDKTTTV
>Mature_582_residues
AADESYPSVKERAFFQGLPFDYAVVFDNALIDRLFSRLRQERALVEDGLLARPDHRPWRLGALITEADTLDRRLSEQIRC
LSGQSLPVASIALVTATTEAREAVSLWASVTCPPNVVVTPDPRAWMAEADLDLVVVFAPGALAHPGLFAALGRALQRDGA
DFAVWNHLLVRRRAEAPGQDITYLRCPDPTRQPVALAHMEAAGPAWAATPRLFETIKGDLGKALIGMARHPLSIALLRGK
PKVVRLNEFLGACRVDSLGTPPWPRQSALVEAYGAALEDETFRLEIDPAHPTQPIRLTPRRRAHSIDIVINFRDKPELTL
AAMGSIYAQTTTARVSLFLIDNQSTPAARAAIDAEAARAPAGIAVRVLSYDRPFNHSAQTNLGAAAGNGEALVFMSNDCA
LVDPGALDEMAAWALAPGVGTVGVRLETAEGRLACSGICALYPDHDFHPIVAEGFDQLGAGLNRETFANTFACACLARAV
FRQAGPLDAIGFPIGLNDVDYCLRLRERGLRHLYLGAFLARHQALGSRPASDDGAQSAFLRQTYGHLLFDKEYMLEYDFL
RQFTAAKLRQDIRSQRDKTTTV

Specific function: Involved in O-antigen biosynthesis [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296
- InterPro:   IPR001173 [H]

Pfam domain/function: PF00534 Glycos_transf_1; PF00535 Glycos_transf_2 [H]

EC number: NA

Molecular weight: Translated: 63558; Mature: 63427

Theoretical pI: Translated: 6.70; Mature: 6.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAADESYPSVKERAFFQGLPFDYAVVFDNALIDRLFSRLRQERALVEDGLLARPDHRPWR
CCCCCCCCCHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCEE
LGALITEADTLDRRLSEQIRCLSGQSLPVASIALVTATTEAREAVSLWASVTCPPNVVVT
EEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECHHHHHHHHHHEEECCCCCEEEC
PDPRAWMAEADLDLVVVFAPGALAHPGLFAALGRALQRDGADFAVWNHLLVRRRAEAPGQ
CCCCCEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
DITYLRCPDPTRQPVALAHMEAAGPAWAATPRLFETIKGDLGKALIGMARHPLSIALLRG
CEEEEECCCCCCCCEEEEEHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECC
KPKVVRLNEFLGACRVDSLGTPPWPRQSALVEAYGAALEDETFRLEIDPAHPTQPIRLTP
CCCEEEHHHHHCHHCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEECC
RRRAHSIDIVINFRDKPELTLAAMGSIYAQTTTARVSLFLIDNQSTPAARAAIDAEAARA
CCCCCEEEEEEEECCCCCEEHHHHHHHHHEEEEEEEEEEEEECCCCCHHHHHHCHHHHCC
PAGIAVRVLSYDRPFNHSAQTNLGAAAGNGEALVFMSNDCALVDPGALDEMAAWALAPGV
CCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEECCCCHHHHHHHHHCCCC
GTVGVRLETAEGRLACSGICALYPDHDFHPIVAEGFDQLGAGLNRETFANTFACACLARA
CEEEEEEECCCCCEEECEEEEECCCCCCCCHHHHCHHHHCCCCCHHHHHHHHHHHHHHHH
VFRQAGPLDAIGFPIGLNDVDYCLRLRERGLRHLYLGAFLARHQALGSRPASDDGAQSAF
HHHHCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
LRQTYGHLLFDKEYMLEYDFLRQFTAAKLRQDIRSQRDKTTTV
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
AADESYPSVKERAFFQGLPFDYAVVFDNALIDRLFSRLRQERALVEDGLLARPDHRPWR
CCCCCCCCHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCEE
LGALITEADTLDRRLSEQIRCLSGQSLPVASIALVTATTEAREAVSLWASVTCPPNVVVT
EEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECHHHHHHHHHHEEECCCCCEEEC
PDPRAWMAEADLDLVVVFAPGALAHPGLFAALGRALQRDGADFAVWNHLLVRRRAEAPGQ
CCCCCEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
DITYLRCPDPTRQPVALAHMEAAGPAWAATPRLFETIKGDLGKALIGMARHPLSIALLRG
CEEEEECCCCCCCCEEEEEHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECC
KPKVVRLNEFLGACRVDSLGTPPWPRQSALVEAYGAALEDETFRLEIDPAHPTQPIRLTP
CCCEEEHHHHHCHHCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEECC
RRRAHSIDIVINFRDKPELTLAAMGSIYAQTTTARVSLFLIDNQSTPAARAAIDAEAARA
CCCCCEEEEEEEECCCCCEEHHHHHHHHHEEEEEEEEEEEEECCCCCHHHHHHCHHHHCC
PAGIAVRVLSYDRPFNHSAQTNLGAAAGNGEALVFMSNDCALVDPGALDEMAAWALAPGV
CCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEECCCCHHHHHHHHHCCCC
GTVGVRLETAEGRLACSGICALYPDHDFHPIVAEGFDQLGAGLNRETFANTFACACLARA
CEEEEEEECCCCCEEECEEEEECCCCCCCCHHHHCHHHHCCCCCHHHHHHHHHHHHHHHH
VFRQAGPLDAIGFPIGLNDVDYCLRLRERGLRHLYLGAFLARHQALGSRPASDDGAQSAF
HHHHCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
LRQTYGHLLFDKEYMLEYDFLRQFTAAKLRQDIRSQRDKTTTV
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]