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The map label for this gene is rarA [H]

Identifier: 83593992

GI number: 83593992

Start: 3088974

End: 3090293

Strand: Reverse

Name: rarA [H]

Synonym: Rru_A2660

Alternate gene names: 83593992

Gene position: 3090293-3088974 (Counterclockwise)

Preceding gene: 83593993

Following gene: 83593991

Centisome position: 71.0

GC content: 67.27

Gene sequence:

>1320_bases
ATGACCAAGGGATTGTTCGACGAGGCCGCCCCCCGGCCTTTGGCCGACCGCCTGCGTCCCCGCCAGCTTGCCGAGGTGGT
CGGACAAGATCATCTGGTCGGGCCGGACGGACCGCTGGGGCGGATGACGGCGGCGCATCGGTTGGCCTCGGTCGTGCTGT
GGGGACCGCCGGGCTGTGGCAAGACCACCATCGCCCGCCTGCTCGCCGATAGCACCGATCTTCATTTCGAACCGCTGTCG
GCGGTCTTCGCCGGGGTCGCCGATCTGCGCAAGATCTTCACCGCCGCGCGTGAGCGGCGGACGGTGGGGCGCGGCACCTT
GCTGTTCATCGACGAGATCCATCGCTTCAACCGCGCCCAGCAGGATGGCTTCCTGCCCTATGTCGAGGACGGTACGGTGG
TGCTGGTCGGCGCGACCACCGAGAACCCGTCCTTCGAACTGAACGCCGCCTTGTTGTCGCGCTGTCAGGTGCTGGTGCTG
CGTCGGCTGGACGATGCGGCCCTGGAAACCCTGATCGCCCGCGCCGAGGCCGAATGCGGCCGCAGCCTGCCGTTGAGCGC
CGAGGGCCGCGAGACCCTGCGCGCCCTGGCCGATGGCGACGGGCGCTATCTGCTTAATCTTGCCGAGGAACTGATCGCCC
TGCCGGCCGAGCCGCTGCTTGACGCCGCCGGTCTGGCCCGCGTCGTTCAGCGCCGGGCGCCGCAATACGACAAGGACCGC
GAGGGCCATTACAACCTGATCAGCGCCCTGCACAAGGCGCTGCGCGGGTCGGATACCGACGCGGCGCTCTATTGGATGGG
GCGGATGCTGGCCGGCGGCGAGGATCCGCTGTATCTGCTGCGCCGGCTGACCCGCTTCGCCGTCGAGGATATCGGTCTGG
CCGATCCCGACGCCCTGCGCCACGCCGTGGCGGCCTGGGACACCTATGAACGCCTGGGCTCGCCCGAGGGCGAACTGGCC
CTGGCCAATCTGGTGATCTATCTGGGCACGGCGCCCAAATCCAACGCCGCCTATAAGGCCTATGGCGCGGCGATGCGGGC
GGCCAAGCAGACCGGATCGCTGATGCCGCCCCTGCATATCCTGAACGCCCCGACCAAGATGATGAAAGAGCTTGGCTATT
CCCAAGGATACGCTTACGACCATGACGCCCCGGATGGCTTTAGCGGCCAGAACTATTTTCCAGACGGCATGGCGCGTCAG
CGCTTCTACAATCCCCCCGAACGCGGTTTCGAGCGCGAAGTGCGCAAACGTCTGGCGTGGTGGGATAAATTGCGCCGTGA
GCGCCGCGCCGCCGAGCCCGGGGACGACGATCAAAGCTAA

Upstream 100 bases:

>100_bases
GCAATGTCCTGGTCGTCGCCCCGACCGATCCCGCTTGATCTCGGCGGCCGGGCGGGGTTTGCTGCGCCCTTGAGGCAGCC
GGGCGGAAGGGTTTAAAGGG

Downstream 100 bases:

>100_bases
TTCCGCCTGTGGCGGAAGAGCAAAGCTAATCCCGCCTGTGGCGGAAGAGACGGAGAAGCACCATGAGCGTGGAGACGGTC
GCCGTCACCCAAGACGAGGA

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 438

Protein sequence:

>439_residues
MTKGLFDEAAPRPLADRLRPRQLAEVVGQDHLVGPDGPLGRMTAAHRLASVVLWGPPGCGKTTIARLLADSTDLHFEPLS
AVFAGVADLRKIFTAARERRTVGRGTLLFIDEIHRFNRAQQDGFLPYVEDGTVVLVGATTENPSFELNAALLSRCQVLVL
RRLDDAALETLIARAEAECGRSLPLSAEGRETLRALADGDGRYLLNLAEELIALPAEPLLDAAGLARVVQRRAPQYDKDR
EGHYNLISALHKALRGSDTDAALYWMGRMLAGGEDPLYLLRRLTRFAVEDIGLADPDALRHAVAAWDTYERLGSPEGELA
LANLVIYLGTAPKSNAAYKAYGAAMRAAKQTGSLMPPLHILNAPTKMMKELGYSQGYAYDHDAPDGFSGQNYFPDGMARQ
RFYNPPERGFEREVRKRLAWWDKLRRERRAAEPGDDDQS

Sequences:

>Translated_439_residues
MTKGLFDEAAPRPLADRLRPRQLAEVVGQDHLVGPDGPLGRMTAAHRLASVVLWGPPGCGKTTIARLLADSTDLHFEPLS
AVFAGVADLRKIFTAARERRTVGRGTLLFIDEIHRFNRAQQDGFLPYVEDGTVVLVGATTENPSFELNAALLSRCQVLVL
RRLDDAALETLIARAEAECGRSLPLSAEGRETLRALADGDGRYLLNLAEELIALPAEPLLDAAGLARVVQRRAPQYDKDR
EGHYNLISALHKALRGSDTDAALYWMGRMLAGGEDPLYLLRRLTRFAVEDIGLADPDALRHAVAAWDTYERLGSPEGELA
LANLVIYLGTAPKSNAAYKAYGAAMRAAKQTGSLMPPLHILNAPTKMMKELGYSQGYAYDHDAPDGFSGQNYFPDGMARQ
RFYNPPERGFEREVRKRLAWWDKLRRERRAAEPGDDDQS
>Mature_438_residues
TKGLFDEAAPRPLADRLRPRQLAEVVGQDHLVGPDGPLGRMTAAHRLASVVLWGPPGCGKTTIARLLADSTDLHFEPLSA
VFAGVADLRKIFTAARERRTVGRGTLLFIDEIHRFNRAQQDGFLPYVEDGTVVLVGATTENPSFELNAALLSRCQVLVLR
RLDDAALETLIARAEAECGRSLPLSAEGRETLRALADGDGRYLLNLAEELIALPAEPLLDAAGLARVVQRRAPQYDKDRE
GHYNLISALHKALRGSDTDAALYWMGRMLAGGEDPLYLLRRLTRFAVEDIGLADPDALRHAVAAWDTYERLGSPEGELAL
ANLVIYLGTAPKSNAAYKAYGAAMRAAKQTGSLMPPLHILNAPTKMMKELGYSQGYAYDHDAPDGFSGQNYFPDGMARQR
FYNPPERGFEREVRKRLAWWDKLRRERRAAEPGDDDQS

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=441, Percent_Identity=43.7641723356009, Blast_Score=325, Evalue=4e-89,
Organism=Homo sapiens, GI18426904, Length=441, Percent_Identity=39.6825396825397, Blast_Score=271, Evalue=1e-72,
Organism=Escherichia coli, GI1787119, Length=426, Percent_Identity=44.131455399061, Blast_Score=372, Evalue=1e-104,
Organism=Saccharomyces cerevisiae, GI6324111, Length=419, Percent_Identity=41.2887828162291, Blast_Score=296, Evalue=4e-81,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 48412; Mature: 48280

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKGLFDEAAPRPLADRLRPRQLAEVVGQDHLVGPDGPLGRMTAAHRLASVVLWGPPGCG
CCCCCCCCCCCCCHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHEEEECCCCCC
KTTIARLLADSTDLHFEPLSAVFAGVADLRKIFTAARERRTVGRGTLLFIDEIHRFNRAQ
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHH
QDGFLPYVEDGTVVLVGATTENPSFELNAALLSRCQVLVLRRLDDAALETLIARAEAECG
HCCCCCEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
RSLPLSAEGRETLRALADGDGRYLLNLAEELIALPAEPLLDAAGLARVVQRRAPQYDKDR
CCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCC
EGHYNLISALHKALRGSDTDAALYWMGRMLAGGEDPLYLLRRLTRFAVEDIGLADPDALR
CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHH
HAVAAWDTYERLGSPEGELALANLVIYLGTAPKSNAAYKAYGAAMRAAKQTGSLMPPLHI
HHHHHHHHHHHHCCCCCHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHH
LNAPTKMMKELGYSQGYAYDHDAPDGFSGQNYFPDGMARQRFYNPPERGFEREVRKRLAW
HCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHH
WDKLRRERRAAEPGDDDQS
HHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TKGLFDEAAPRPLADRLRPRQLAEVVGQDHLVGPDGPLGRMTAAHRLASVVLWGPPGCG
CCCCCCCCCCCCHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHEEEECCCCCC
KTTIARLLADSTDLHFEPLSAVFAGVADLRKIFTAARERRTVGRGTLLFIDEIHRFNRAQ
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHH
QDGFLPYVEDGTVVLVGATTENPSFELNAALLSRCQVLVLRRLDDAALETLIARAEAECG
HCCCCCEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
RSLPLSAEGRETLRALADGDGRYLLNLAEELIALPAEPLLDAAGLARVVQRRAPQYDKDR
CCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCC
EGHYNLISALHKALRGSDTDAALYWMGRMLAGGEDPLYLLRRLTRFAVEDIGLADPDALR
CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHH
HAVAAWDTYERLGSPEGELALANLVIYLGTAPKSNAAYKAYGAAMRAAKQTGSLMPPLHI
HHHHHHHHHHHHCCCCCHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHH
LNAPTKMMKELGYSQGYAYDHDAPDGFSGQNYFPDGMARQRFYNPPERGFEREVRKRLAW
HCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHH
WDKLRRERRAAEPGDDDQS
HHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]