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The map label for this gene is pchR [H]

Identifier: 83593673

GI number: 83593673

Start: 2709472

End: 2710404

Strand: Reverse

Name: pchR [H]

Synonym: Rru_A2338

Alternate gene names: 83593673

Gene position: 2710404-2709472 (Counterclockwise)

Preceding gene: 83593674

Following gene: 83593672

Centisome position: 62.27

GC content: 62.92

Gene sequence:

>933_bases
ATGGAGAGGATACGCCCATCGAGTGGACACCCCACGGGCGAGGCGACGACGCGGATGTTGGGTCTTTGCGAGGACGAGCG
CGAAGCGGTGGGGACACTCTCGGGACTGCGGTCCCGCTGTTTCGATCTCCGTCCGGGACTGGCGGTCACGTTGTATGGCG
GGAATGGGCGCGACGAGATCCGGGCGACTTTGCGCAATACCAGCGAGAACATCCACTTCTGCTGTCTCCTGCGCGGAGCA
TCGGAAGCGGTCATCCGCAATCACCTAGCGGCTCCCGCCGTGGGCGAGGGCTATGTCGTCTTCGCTCCCGGCGAGGACTT
CTCGGCCCGCTATGGTCCCACCTACCGCCATATCGATCTGATGGTGGCGCCGGACGTTCTCGCCGACCTCGTCGGCGATG
ATTTCGACCAAATCCGGCCGGAGGTGGAAAACGGTTTCATCATGCGGGCGCTGCATGCGGGGCACCGAACCGTGGGAGCC
GCCGCGGAGCTCGCCAGCCAGTTGGAGGAAGAGCACTCCGAGCGGCTGTTTCTCTATGCGGCGGCCCTGAAATTCCTCGG
GGCGCACTTTTGCGGCACCAGGGGGGGGGCCCTCAAGCCAACCCTGTCCCCGCGCGAACGACAACGGTTGCTCGCCGCGC
GCGACCGTCTTTTGCTCGATCTGAGCGCGCCGCCCACCATCGCCGAATTGGCCCGCGAGATAGGATTGAACCAGCTCAAG
CTCAAACAGGGGTTTAAGACCCTGTTCGGAACCAGCATCTACGCCCTGTTTCAACGGCACCGCATGGAGCGTGCCTGCGC
TCTTTTGCGTACGCATAGCGTGACCGAAACGGCCCTGACGCTGGGCTACAGTAATCTGAGCCATTTCAGCACGGCCTATC
GCAAACAGTTCGGCGATCTGCCCCGGAACGAACGTAAAAAATACGTCGCATAG

Upstream 100 bases:

>100_bases
TTCAGCCGTGCGCGGGCTGTGTATTGAAAATAAGACTTAGTTTCATATAGACTGCCCCTTGTTCAGTGGGTTTCTTCTGT
CGTTTTAGGGAGGGGTGGGG

Downstream 100 bases:

>100_bases
GGTTTTGCCGCCGCGAGGATCGGCGCCGGACGAGCCTGCTCCAGGCCTTCCTCCGCGGTCCCGACGGCCCTCCCATGGGG
ATGTCCATGGGCTTTCTTCC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MERIRPSSGHPTGEATTRMLGLCEDEREAVGTLSGLRSRCFDLRPGLAVTLYGGNGRDEIRATLRNTSENIHFCCLLRGA
SEAVIRNHLAAPAVGEGYVVFAPGEDFSARYGPTYRHIDLMVAPDVLADLVGDDFDQIRPEVENGFIMRALHAGHRTVGA
AAELASQLEEEHSERLFLYAAALKFLGAHFCGTRGGALKPTLSPRERQRLLAARDRLLLDLSAPPTIAELAREIGLNQLK
LKQGFKTLFGTSIYALFQRHRMERACALLRTHSVTETALTLGYSNLSHFSTAYRKQFGDLPRNERKKYVA

Sequences:

>Translated_310_residues
MERIRPSSGHPTGEATTRMLGLCEDEREAVGTLSGLRSRCFDLRPGLAVTLYGGNGRDEIRATLRNTSENIHFCCLLRGA
SEAVIRNHLAAPAVGEGYVVFAPGEDFSARYGPTYRHIDLMVAPDVLADLVGDDFDQIRPEVENGFIMRALHAGHRTVGA
AAELASQLEEEHSERLFLYAAALKFLGAHFCGTRGGALKPTLSPRERQRLLAARDRLLLDLSAPPTIAELAREIGLNQLK
LKQGFKTLFGTSIYALFQRHRMERACALLRTHSVTETALTLGYSNLSHFSTAYRKQFGDLPRNERKKYVA
>Mature_310_residues
MERIRPSSGHPTGEATTRMLGLCEDEREAVGTLSGLRSRCFDLRPGLAVTLYGGNGRDEIRATLRNTSENIHFCCLLRGA
SEAVIRNHLAAPAVGEGYVVFAPGEDFSARYGPTYRHIDLMVAPDVLADLVGDDFDQIRPEVENGFIMRALHAGHRTVGA
AAELASQLEEEHSERLFLYAAALKFLGAHFCGTRGGALKPTLSPRERQRLLAARDRLLLDLSAPPTIAELAREIGLNQLK
LKQGFKTLFGTSIYALFQRHRMERACALLRTHSVTETALTLGYSNLSHFSTAYRKQFGDLPRNERKKYVA

Specific function: Positive activator of the genes for pyochelin and ferripyochelin receptors [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34295; Mature: 34295

Theoretical pI: Translated: 8.58; Mature: 8.58

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERIRPSSGHPTGEATTRMLGLCEDEREAVGTLSGLRSRCFDLRPGLAVTLYGGNGRDEI
CCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHH
RATLRNTSENIHFCCLLRGASEAVIRNHLAAPAVGEGYVVFAPGEDFSARYGPTYRHIDL
HHHHHCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEE
MVAPDVLADLVGDDFDQIRPEVENGFIMRALHAGHRTVGAAAELASQLEEEHSERLFLYA
EECHHHHHHHHCCCHHHHCCHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
AALKFLGAHFCGTRGGALKPTLSPRERQRLLAARDRLLLDLSAPPTIAELAREIGLNQLK
HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHCCCHHH
LKQGFKTLFGTSIYALFQRHRMERACALLRTHSVTETALTLGYSNLSHFSTAYRKQFGDL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHCCC
PRNERKKYVA
CCHHHHCCCC
>Mature Secondary Structure
MERIRPSSGHPTGEATTRMLGLCEDEREAVGTLSGLRSRCFDLRPGLAVTLYGGNGRDEI
CCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHH
RATLRNTSENIHFCCLLRGASEAVIRNHLAAPAVGEGYVVFAPGEDFSARYGPTYRHIDL
HHHHHCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEE
MVAPDVLADLVGDDFDQIRPEVENGFIMRALHAGHRTVGAAAELASQLEEEHSERLFLYA
EECHHHHHHHHCCCHHHHCCHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
AALKFLGAHFCGTRGGALKPTLSPRERQRLLAARDRLLLDLSAPPTIAELAREIGLNQLK
HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHCCCHHH
LKQGFKTLFGTSIYALFQRHRMERACALLRTHSVTETALTLGYSNLSHFSTAYRKQFGDL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHCCC
PRNERKKYVA
CCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8397186; 10984043 [H]