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The map label for this gene is exbD [H]

Identifier: 83593489

GI number: 83593489

Start: 2502214

End: 2502681

Strand: Reverse

Name: exbD [H]

Synonym: Rru_A2154

Alternate gene names: 83593489

Gene position: 2502681-2502214 (Counterclockwise)

Preceding gene: 83593490

Following gene: 83593488

Centisome position: 57.5

GC content: 69.23

Gene sequence:

>468_bases
ATGGCCGGGGCGCTTCTTCCCTCGGGGGATGACGAGGGCGGCTACAAGCCGATCGCCGAGATCAACATCACGCCGATGGT
CGACGTGATGCTGGTGCTGCTGATCATCTTCATGGTCGCCGCCCCCCTGATGTCGATGGGGGTGCCCGTCGATCTGCCGC
GCACCCAGGCGGCCGAGGCCCAGCCGCCCAAGGATCCGGTGGTGGTCAGCATCGACCAGACCGGCGCCCTGTTCCTGCGC
GACCAGCCGCTGGCCGAGGCCGATATGGACGCCCGGCTGGCCGCCCTGGCCAAGGAAAAGCCCGGTTCGGTGGTTTATGT
GCGCGGCCACAAGGATCTGCCCTATGGACGGGTGATGGAGGTGATGGGGCGGATCGGTCAGGCCGGCTTCGCCAAGGTCT
CGCTGATGGCCGAAATGCCCACGCCGCCAGCCGCCGCCGGGGCCGCCGCCACGGGAACGGGCCGGTGA

Upstream 100 bases:

>100_bases
GCCTTGGCCGCATCGGCCAGCGCTTCCAGGCGTCGATGATCCCGCTGGCCGGCCGCCTTGCCCGCGATGTTCCCGACCAG
CTGCGCCGGGCGGGGGAGTG

Downstream 100 bases:

>100_bases
GGGGGCCTTCGGGGCGGACTTGGGGCATCGCCGGATCGGCGGCGCTCCATCTTGGCGTTGTCGCGGCCCTGATGGCCTCG
CCGACACCCGAGACGCCGCC

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 154

Protein sequence:

>155_residues
MAGALLPSGDDEGGYKPIAEINITPMVDVMLVLLIIFMVAAPLMSMGVPVDLPRTQAAEAQPPKDPVVVSIDQTGALFLR
DQPLAEADMDARLAALAKEKPGSVVYVRGHKDLPYGRVMEVMGRIGQAGFAKVSLMAEMPTPPAAAGAAATGTGR

Sequences:

>Translated_155_residues
MAGALLPSGDDEGGYKPIAEINITPMVDVMLVLLIIFMVAAPLMSMGVPVDLPRTQAAEAQPPKDPVVVSIDQTGALFLR
DQPLAEADMDARLAALAKEKPGSVVYVRGHKDLPYGRVMEVMGRIGQAGFAKVSLMAEMPTPPAAAGAAATGTGR
>Mature_154_residues
AGALLPSGDDEGGYKPIAEINITPMVDVMLVLLIIFMVAAPLMSMGVPVDLPRTQAAEAQPPKDPVVVSIDQTGALFLRD
QPLAEADMDARLAALAKEKPGSVVYVRGHKDLPYGRVMEVMGRIGQAGFAKVSLMAEMPTPPAAAGAAATGTGR

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=138, Percent_Identity=38.4057971014493, Blast_Score=99, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400
- InterPro:   IPR014170 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 16125; Mature: 15994

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
7.1 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
6.5 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGALLPSGDDEGGYKPIAEINITPMVDVMLVLLIIFMVAAPLMSMGVPVDLPRTQAAEA
CCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
QPPKDPVVVSIDQTGALFLRDQPLAEADMDARLAALAKEKPGSVVYVRGHKDLPYGRVME
CCCCCCEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHH
VMGRIGQAGFAKVSLMAEMPTPPAAAGAAATGTGR
HHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AGALLPSGDDEGGYKPIAEINITPMVDVMLVLLIIFMVAAPLMSMGVPVDLPRTQAAEA
CCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
QPPKDPVVVSIDQTGALFLRDQPLAEADMDARLAALAKEKPGSVVYVRGHKDLPYGRVME
CCCCCCEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHH
VMGRIGQAGFAKVSLMAEMPTPPAAAGAAATGTGR
HHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]