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The map label for this gene is dcrA [H]

Identifier: 83593358

GI number: 83593358

Start: 2335348

End: 2337819

Strand: Direct

Name: dcrA [H]

Synonym: Rru_A2023

Alternate gene names: 83593358

Gene position: 2335348-2337819 (Clockwise)

Preceding gene: 83593357

Following gene: 83593365

Centisome position: 53.65

GC content: 64.08

Gene sequence:

>2472_bases
ATGATAAAACTCCATTCCATTCAGATGAAGATCTCAGGCCTGTCGGGGGCCTGCCTGATCATCGCCGCCGCCACTTTGAT
TTCTTTTTCCATTTACTCGTCGAAAACCACCCAGACCTATGTCGGCGAGCGCACCGGCGCGCTGAGCCTCGCCAATGCCG
AGGATATCTTGCGCAATCTGGCGACCACCCAGGCCGCCTCGATCAAGGCGACGCTGAACGGCGCTTTTGATGCCGCGCGC
ACCACCGCCAACACCTTCGGCGCCCTGGAAGACGGCCCCAACAACAGCCCCGATCAGGCCCGGGCGCAACGTCAGGCGTT
CAACGCCATCTTGTTGAACGTCTTGAAGGACAATCCGGAATTCAACGGCACTTATTCGGCTTGGCAGCCTGATGGGCTTG
ATGGCCAAGACGCCCTGTTCGTTGACGGCACGGCGACCGGATCGGACAAGACCGGGCGATTTTTGCCCTATTGGACGCGC
GGCGCCGATGGCACCCTGGCCATCCAGCCCTTGGTCGAATACGACAGCGAGGCCCGCCATCCCAATGGCATCGTCAAGGG
GGCGTGGTATCTGGGGCCGCAGCGCACCGGCAAGGAAAGCATCGTTGGGCCGCTGCCCTATATCGTTCAGGGCAAGCCGG
TTTTTCTCGCCACCATGTCGGTTCCCGTCGTCGTCGGCGGGGTTTTCCAAGGCGTCGCCGGGGCGGATTACGATCTGTCT
TTTGTGCAGAAGCTGGCGGTCAGCGTCTCGGCCTCGCTCTTTGACGATCATAACGATGTGATGATCGTCAATGGCGACGG
CTTGGTCGTCGCCCACAGCAAATACCCGCAATCGATCGGCAAGCCGCTGGGCGAGAACGATCCCGATGCGGCGGCGCTCT
TCCCCAAGTTCGATCCGACCAAGGCGGTGACTGTTGACGATGGAGCGACCAAATCGCTGGTCGCCATGGCGCCGATCGCC
ATGGGCCGCACGGGAACCTCGTGGGCGGTGGTCATCCGCGTGCCACGCGCCGTCGTGCTTGAACAAGCCATCGCCCTTGA
AACCGAGATCCAGAGCCGCACCAACGATACCATCAGCACCCAGCTTGGCGTTGGCGTCGTCGTCGCCATTCTTGGCATCG
GGCTGGTCTGGCTGTCGGCGGGCGGCATCTCGCGGCCTTTGGTGCGCGTCGCCCAGGCGATCTCCCAGATCTCCGGGGGC
AAGACCGACATTACGATCGTCGGCCTGACCCGCAAGGACGAGTTGGGCACCATGGCGCGGGCGACCGACGCCCTGCGCAC
CTCGGTCGACGAGGCCTTCAAGCTCAAGCAGATGGTCGAGCTGCAGCCCACCCCCACCCTGCTCTGCCATCCCGCCGATC
TGACCATTACCTATATGAACGCCGCCGGGCGGACGCTGCTTGATCATGTTCTCAAGGGACGCGGCCTGTCGGCGGCCCAG
GCGATGGGCCACCCGGCCAACGAGTTCCACCCGTCGCCGGGCGAAATGCGCCGCCGCGCCACCACCCCGTCGGCCATGCC
CTTCAAAGAGCGCTTCACCCTTGATGGCGTGATCATCGAAAGCAACGTCACCCCGATCTTCGATCAGGGCGGGGCCTTCC
TCGGGCCGATGTTGAACTGGACCGACGTCACGCGCTATGTGCGCATGGCCGATGATTTCGAAGGCAAGGTGCGCTCGGTG
GCCTCGGCCGTCAGCGACTCGGCGCAGAAACTGTCCCATGATTCCGAAGACATGCGCCGCATCTCCGAGGGCGTCAGCCA
GAAAAGCTCAAACGTCGCCGCGGCATCGGAGGAAATGGGCATCAACATGCAGACGGTGGCGGCGGCGACCAACGAACTGA
CCGCCTCGCAAGGCGAAATCGCCCGCACCATCTCGCTCACCGCCAATGGGGCGACCAAGGCCGCCGAATCGGTGACGACG
GCGGTGGACCGGGTGCGCGGCCTGGAAAAAGCCGCCGCCGATATCGGCGCGGTGATCGCCCTGATCACCGACATCGCCAG
CCAGACCAATCTGCTGGCCCTCAACGCCACCATCGAGGCGGCACGGGCGGGAGAAGCCGGCAAGGGCTTCGCCGTGGTCG
CCGGCGAGGTCAAGGCCCTGGCCAATCAAACGGCGCGGGCCACCGATACCATCCGGGCGACGGTGGTCGATATGCAGCAA
TGGATGGGTCAGGCCGTGGACTCGATCACCGAAGTCAATGACATCGTCATCGGCATGCGCGAACAGGCCTCGGGCGCGGC
GGCGGCCACCGAACAGCAAACCTCGGCCACCTCGGAAATCACCCGCAACGTCGAACAGGCCTCGATCGCCTCGCGCGAGG
TCGGCCTGCATATCGGTTCGGTCGCCAGCGAAGCCATGCAGGCCCTTGAAAACACCCAGGGCATCAAAGCCGCCGCCGAC
GACCTGTCGGCCTCGGCCCGCCAGTTGGAAAAGGAGGTCGACGGCTTCCTCAGCCACCTGCGCGAGGTATAG

Upstream 100 bases:

>100_bases
CGTGGCATCGCGCATGCGTGAGATCGCCCGGGGCTCTCGCAAGCCCGGTCGCCAGCACAGGATACCGTCCTGTCTGTCTC
ATAAAAAGGCGCGGGAAATC

Downstream 100 bases:

>100_bases
GCGGAGGGGCTGCGGTTTGGTCTAGCGGCTGGCGCCGATCCAGCCGCCGCCCAGCACCCGGGCGTCGTTGTCGTCAAGGC
CGTAGAAGACGGCGGCCTGG

Product: methyl-accepting chemotaxis sensory transducer

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 823; Mature: 823

Protein sequence:

>823_residues
MIKLHSIQMKISGLSGACLIIAAATLISFSIYSSKTTQTYVGERTGALSLANAEDILRNLATTQAASIKATLNGAFDAAR
TTANTFGALEDGPNNSPDQARAQRQAFNAILLNVLKDNPEFNGTYSAWQPDGLDGQDALFVDGTATGSDKTGRFLPYWTR
GADGTLAIQPLVEYDSEARHPNGIVKGAWYLGPQRTGKESIVGPLPYIVQGKPVFLATMSVPVVVGGVFQGVAGADYDLS
FVQKLAVSVSASLFDDHNDVMIVNGDGLVVAHSKYPQSIGKPLGENDPDAAALFPKFDPTKAVTVDDGATKSLVAMAPIA
MGRTGTSWAVVIRVPRAVVLEQAIALETEIQSRTNDTISTQLGVGVVVAILGIGLVWLSAGGISRPLVRVAQAISQISGG
KTDITIVGLTRKDELGTMARATDALRTSVDEAFKLKQMVELQPTPTLLCHPADLTITYMNAAGRTLLDHVLKGRGLSAAQ
AMGHPANEFHPSPGEMRRRATTPSAMPFKERFTLDGVIIESNVTPIFDQGGAFLGPMLNWTDVTRYVRMADDFEGKVRSV
ASAVSDSAQKLSHDSEDMRRISEGVSQKSSNVAAASEEMGINMQTVAAATNELTASQGEIARTISLTANGATKAAESVTT
AVDRVRGLEKAAADIGAVIALITDIASQTNLLALNATIEAARAGEAGKGFAVVAGEVKALANQTARATDTIRATVVDMQQ
WMGQAVDSITEVNDIVIGMREQASGAAAATEQQTSATSEITRNVEQASIASREVGLHIGSVASEAMQALENTQGIKAAAD
DLSASARQLEKEVDGFLSHLREV

Sequences:

>Translated_823_residues
MIKLHSIQMKISGLSGACLIIAAATLISFSIYSSKTTQTYVGERTGALSLANAEDILRNLATTQAASIKATLNGAFDAAR
TTANTFGALEDGPNNSPDQARAQRQAFNAILLNVLKDNPEFNGTYSAWQPDGLDGQDALFVDGTATGSDKTGRFLPYWTR
GADGTLAIQPLVEYDSEARHPNGIVKGAWYLGPQRTGKESIVGPLPYIVQGKPVFLATMSVPVVVGGVFQGVAGADYDLS
FVQKLAVSVSASLFDDHNDVMIVNGDGLVVAHSKYPQSIGKPLGENDPDAAALFPKFDPTKAVTVDDGATKSLVAMAPIA
MGRTGTSWAVVIRVPRAVVLEQAIALETEIQSRTNDTISTQLGVGVVVAILGIGLVWLSAGGISRPLVRVAQAISQISGG
KTDITIVGLTRKDELGTMARATDALRTSVDEAFKLKQMVELQPTPTLLCHPADLTITYMNAAGRTLLDHVLKGRGLSAAQ
AMGHPANEFHPSPGEMRRRATTPSAMPFKERFTLDGVIIESNVTPIFDQGGAFLGPMLNWTDVTRYVRMADDFEGKVRSV
ASAVSDSAQKLSHDSEDMRRISEGVSQKSSNVAAASEEMGINMQTVAAATNELTASQGEIARTISLTANGATKAAESVTT
AVDRVRGLEKAAADIGAVIALITDIASQTNLLALNATIEAARAGEAGKGFAVVAGEVKALANQTARATDTIRATVVDMQQ
WMGQAVDSITEVNDIVIGMREQASGAAAATEQQTSATSEITRNVEQASIASREVGLHIGSVASEAMQALENTQGIKAAAD
DLSASARQLEKEVDGFLSHLREV
>Mature_823_residues
MIKLHSIQMKISGLSGACLIIAAATLISFSIYSSKTTQTYVGERTGALSLANAEDILRNLATTQAASIKATLNGAFDAAR
TTANTFGALEDGPNNSPDQARAQRQAFNAILLNVLKDNPEFNGTYSAWQPDGLDGQDALFVDGTATGSDKTGRFLPYWTR
GADGTLAIQPLVEYDSEARHPNGIVKGAWYLGPQRTGKESIVGPLPYIVQGKPVFLATMSVPVVVGGVFQGVAGADYDLS
FVQKLAVSVSASLFDDHNDVMIVNGDGLVVAHSKYPQSIGKPLGENDPDAAALFPKFDPTKAVTVDDGATKSLVAMAPIA
MGRTGTSWAVVIRVPRAVVLEQAIALETEIQSRTNDTISTQLGVGVVVAILGIGLVWLSAGGISRPLVRVAQAISQISGG
KTDITIVGLTRKDELGTMARATDALRTSVDEAFKLKQMVELQPTPTLLCHPADLTITYMNAAGRTLLDHVLKGRGLSAAQ
AMGHPANEFHPSPGEMRRRATTPSAMPFKERFTLDGVIIESNVTPIFDQGGAFLGPMLNWTDVTRYVRMADDFEGKVRSV
ASAVSDSAQKLSHDSEDMRRISEGVSQKSSNVAAASEEMGINMQTVAAATNELTASQGEIARTISLTANGATKAAESVTT
AVDRVRGLEKAAADIGAVIALITDIASQTNLLALNATIEAARAGEAGKGFAVVAGEVKALANQTARATDTIRATVVDMQQ
WMGQAVDSITEVNDIVIGMREQASGAAAATEQQTSATSEITRNVEQASIASREVGLHIGSVASEAMQALENTQGIKAAAD
DLSASARQLEKEVDGFLSHLREV

Specific function: Signal Transducer For Aerotaxis. The Aerotactic Response Is The Accumulation Of Cells Around Air Bubbles. The Nature Of The Sensory Stimulus Detected By This Protein Is The Proton Motive Force Or Cellular Redox State. It Uses A FAD Prosthetic Group As A R

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1789453, Length=145, Percent_Identity=39.3103448275862, Blast_Score=92, Evalue=2e-19,
Organism=Escherichia coli, GI1788195, Length=235, Percent_Identity=30.2127659574468, Blast_Score=85, Evalue=2e-17,
Organism=Escherichia coli, GI2367378, Length=235, Percent_Identity=31.4893617021277, Blast_Score=85, Evalue=2e-17,
Organism=Escherichia coli, GI1788194, Length=215, Percent_Identity=33.4883720930233, Blast_Score=84, Evalue=4e-17,
Organism=Escherichia coli, GI1787690, Length=270, Percent_Identity=28.5185185185185, Blast_Score=76, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 86577; Mature: 86577

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKLHSIQMKISGLSGACLIIAAATLISFSIYSSKTTQTYVGERTGALSLANAEDILRNL
CEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHECCCCCCCEEECCHHHHHHHH
ATTQAASIKATLNGAFDAARTTANTFGALEDGPNNSPDQARAQRQAFNAILLNVLKDNPE
HHHHHHEEEEECCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
FNGTYSAWQPDGLDGQDALFVDGTATGSDKTGRFLPYWTRGADGTLAIQPLVEYDSEARH
CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCEEEEEEHHHCCCCCCC
PNGIVKGAWYLGPQRTGKESIVGPLPYIVQGKPVFLATMSVPVVVGGVFQGVAGADYDLS
CCCCEEEEEEECCCCCCCCCCCCCCCCEECCCEEEEEECCHHHHHHHHHHCCCCCCCCHH
FVQKLAVSVSASLFDDHNDVMIVNGDGLVVAHSKYPQSIGKPLGENDPDAAALFPKFDPT
HHHHHHHHHHHHHCCCCCCEEEECCCEEEEECCCCCHHHCCCCCCCCCCCEEECCCCCCC
KAVTVDDGATKSLVAMAPIAMGRTGTSWAVVIRVPRAVVLEQAIALETEIQSRTNDTIST
CEEEECCCCCHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCHHH
QLGVGVVVAILGIGLVWLSAGGISRPLVRVAQAISQISGGKTDITIVGLTRKDELGTMAR
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHH
ATDALRTSVDEAFKLKQMVELQPTPTLLCHPADLTITYMNAAGRTLLDHVLKGRGLSAAQ
HHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEECCCCHHHHHHHHHCCCCCHHH
AMGHPANEFHPSPGEMRRRATTPSAMPFKERFTLDGVIIESNVTPIFDQGGAFLGPMLNW
HCCCCHHHCCCCHHHHHHHCCCCCCCCHHHHEEECCEEEECCCCCEECCCCCHHCCCCCH
TDVTRYVRMADDFEGKVRSVASAVSDSAQKLSHDSEDMRRISEGVSQKSSNVAAASEEMG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHC
INMQTVAAATNELTASQGEIARTISLTANGATKAAESVTTAVDRVRGLEKAAADIGAVIA
CCHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LITDIASQTNLLALNATIEAARAGEAGKGFAVVAGEVKALANQTARATDTIRATVVDMQQ
HHHHHHCCCCEEEEECCHHHHHCCCCCCCEEEEHHHHHHHHHCHHHHHHHHHHHHHHHHH
WMGQAVDSITEVNDIVIGMREQASGAAAATEQQTSATSEITRNVEQASIASREVGLHIGS
HHHHHHHHHHHHHHHEEEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
VASEAMQALENTQGIKAAADDLSASARQLEKEVDGFLSHLREV
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIKLHSIQMKISGLSGACLIIAAATLISFSIYSSKTTQTYVGERTGALSLANAEDILRNL
CEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHECCCCCCCEEECCHHHHHHHH
ATTQAASIKATLNGAFDAARTTANTFGALEDGPNNSPDQARAQRQAFNAILLNVLKDNPE
HHHHHHEEEEECCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
FNGTYSAWQPDGLDGQDALFVDGTATGSDKTGRFLPYWTRGADGTLAIQPLVEYDSEARH
CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCEEEEEEHHHCCCCCCC
PNGIVKGAWYLGPQRTGKESIVGPLPYIVQGKPVFLATMSVPVVVGGVFQGVAGADYDLS
CCCCEEEEEEECCCCCCCCCCCCCCCCEECCCEEEEEECCHHHHHHHHHHCCCCCCCCHH
FVQKLAVSVSASLFDDHNDVMIVNGDGLVVAHSKYPQSIGKPLGENDPDAAALFPKFDPT
HHHHHHHHHHHHHCCCCCCEEEECCCEEEEECCCCCHHHCCCCCCCCCCCEEECCCCCCC
KAVTVDDGATKSLVAMAPIAMGRTGTSWAVVIRVPRAVVLEQAIALETEIQSRTNDTIST
CEEEECCCCCHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCHHH
QLGVGVVVAILGIGLVWLSAGGISRPLVRVAQAISQISGGKTDITIVGLTRKDELGTMAR
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHH
ATDALRTSVDEAFKLKQMVELQPTPTLLCHPADLTITYMNAAGRTLLDHVLKGRGLSAAQ
HHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEECCCCHHHHHHHHHCCCCCHHH
AMGHPANEFHPSPGEMRRRATTPSAMPFKERFTLDGVIIESNVTPIFDQGGAFLGPMLNW
HCCCCHHHCCCCHHHHHHHCCCCCCCCHHHHEEECCEEEECCCCCEECCCCCHHCCCCCH
TDVTRYVRMADDFEGKVRSVASAVSDSAQKLSHDSEDMRRISEGVSQKSSNVAAASEEMG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHC
INMQTVAAATNELTASQGEIARTISLTANGATKAAESVTTAVDRVRGLEKAAADIGAVIA
CCHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LITDIASQTNLLALNATIEAARAGEAGKGFAVVAGEVKALANQTARATDTIRATVVDMQQ
HHHHHHCCCCEEEEECCHHHHHCCCCCCCEEEEHHHHHHHHHCHHHHHHHHHHHHHHHHH
WMGQAVDSITEVNDIVIGMREQASGAAAATEQQTSATSEITRNVEQASIASREVGLHIGS
HHHHHHHHHHHHHHHEEEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
VASEAMQALENTQGIKAAADDLSASARQLEKEVDGFLSHLREV
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1548224 [H]