| Definition | Rhodospirillum rubrum ATCC 11170 chromosome, complete genome. |
|---|---|
| Accession | NC_007643 |
| Length | 4,352,825 |
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The map label for this gene is sam [H]
Identifier: 83593342
GI number: 83593342
Start: 2318681
End: 2319718
Strand: Reverse
Name: sam [H]
Synonym: Rru_A2007
Alternate gene names: 83593342
Gene position: 2319718-2318681 (Counterclockwise)
Preceding gene: 83593345
Following gene: 83593339
Centisome position: 53.29
GC content: 69.36
Gene sequence:
>1038_bases ATGGCCGTTTCTTCCGCTGCTCCGCGTCCGGGCGATCGTGCCGCCGGCGCTCCCGACGGCGCCCCTGACAGTGCCCCCGA TGGCGCCCCCGATGGCGTCCATGATACGGCGCGCGGCGTCGCCTGGGTTCTGGTCGCCTGCGTCATCTTCACCCTGGTTT ATGCTTCGGGCCGTCTGGCCGGCGGCGGTGTCGGCGGCCTGCAGATCATGGCCATCCGCTATGCCTCGGCCCTGGTTTGC ATCGTCGGCTTCGCCTTGGCCCGGCGCGGCGGGGTGAGCGCCTGCCGCAGCCCGCGCCCCTTTCGCCATTTCAGCCGGGC GATGATGGGCGGCCTGGGCGGCGCCTGCCTGATCCAGGGGGTGACCTTGCTGCCGATGGCCGAGGCCTCGGCCATCGGTC TGCTGGACGGCGTCTTCTCGGTGATCCTGGGCATCGTGCTGCTGGGCGAGCGGGTGAGGCCCCTGCGCTGGCTTGGCGTG GCGCTGTCGCTGGTGGGGGGCGTGCTGGTGATCGCCGGACGGGCCGACCTCAGCGGCTTGCTTGATCACCTGCTGGCCGG CGGGGCGGTGTTCTATCCCCTGGCTGGCGCCGCCTTCGTCGCCATGGAACGCGTTCTCATGCGTCAATTGGCGCTGCGCG AGGGCAAGATGGCGATCTTGTTCCACGTCAATTTGTTTGGCACGCTGATCTTGATGCCGGTCGCCTTGATGACCTGGGTG CCCCTTGAGGGGCCGACGCTGGCCTTGCTGATCGCCTTCGGGCCGCTGGCCCTGCTGGGCCAGTTCTGCAATATCCGGGG GTTCGCCCTGGCCGAGGTCTCGATCACCGGACCGGTGTGGTATTCCTGGCTGATCTTCGCCGCCGCCCTCGGCTGGGTGA TGTTTGACGAGGTTCCCGGGCCGGGCGTCATCCTGGGTGGCGCCGTTATCGCCCTCGGCGGAGTTTTCCTCTGCGCTTCG GGGCGCAAGCGGACCCCGGCCCTACCGGCCGATACCCTGGGCCCTTCGGAAACCCCCGGCAAGGCAGGGCGCGAATGA
Upstream 100 bases:
>100_bases TTTTCTTAACTGCGGTCCGGCCGATCAGGGCTTGCGGATCGGCCGGCGATGGCGAAGATGGGGGCGGCCTCCCCCGCCAT TCCCCTTCAGGACCCCCCTT
Downstream 100 bases:
>100_bases CCCAAAAAAGCCCCCCTATCCGTCTTGAACAGGGGGGGCGCCGATGGTGACATTGCGCGATATGCGGCGCGTTCTGGGCG TGGCGATGTGGGGCGAGAAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 345; Mature: 344
Protein sequence:
>345_residues MAVSSAAPRPGDRAAGAPDGAPDSAPDGAPDGVHDTARGVAWVLVACVIFTLVYASGRLAGGGVGGLQIMAIRYASALVC IVGFALARRGGVSACRSPRPFRHFSRAMMGGLGGACLIQGVTLLPMAEASAIGLLDGVFSVILGIVLLGERVRPLRWLGV ALSLVGGVLVIAGRADLSGLLDHLLAGGAVFYPLAGAAFVAMERVLMRQLALREGKMAILFHVNLFGTLILMPVALMTWV PLEGPTLALLIAFGPLALLGQFCNIRGFALAEVSITGPVWYSWLIFAAALGWVMFDEVPGPGVILGGAVIALGGVFLCAS GRKRTPALPADTLGPSETPGKAGRE
Sequences:
>Translated_345_residues MAVSSAAPRPGDRAAGAPDGAPDSAPDGAPDGVHDTARGVAWVLVACVIFTLVYASGRLAGGGVGGLQIMAIRYASALVC IVGFALARRGGVSACRSPRPFRHFSRAMMGGLGGACLIQGVTLLPMAEASAIGLLDGVFSVILGIVLLGERVRPLRWLGV ALSLVGGVLVIAGRADLSGLLDHLLAGGAVFYPLAGAAFVAMERVLMRQLALREGKMAILFHVNLFGTLILMPVALMTWV PLEGPTLALLIAFGPLALLGQFCNIRGFALAEVSITGPVWYSWLIFAAALGWVMFDEVPGPGVILGGAVIALGGVFLCAS GRKRTPALPADTLGPSETPGKAGRE >Mature_344_residues AVSSAAPRPGDRAAGAPDGAPDSAPDGAPDGVHDTARGVAWVLVACVIFTLVYASGRLAGGGVGGLQIMAIRYASALVCI VGFALARRGGVSACRSPRPFRHFSRAMMGGLGGACLIQGVTLLPMAEASAIGLLDGVFSVILGIVLLGERVRPLRWLGVA LSLVGGVLVIAGRADLSGLLDHLLAGGAVFYPLAGAAFVAMERVLMRQLALREGKMAILFHVNLFGTLILMPVALMTWVP LEGPTLALLIAFGPLALLGQFCNIRGFALAEVSITGPVWYSWLIFAAALGWVMFDEVPGPGVILGGAVIALGGVFLCASG RKRTPALPADTLGPSETPGKAGRE
Specific function: Transports S-adenosylmethionine [H]
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the drug/metabolite transporter (DMT) superfamily. 10 TMS drug/metabolite exporter (TC 2.A.7.3) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 35354; Mature: 35223
Theoretical pI: Translated: 8.84; Mature: 8.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVSSAAPRPGDRAAGAPDGAPDSAPDGAPDGVHDTARGVAWVLVACVIFTLVYASGRLA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC GGGVGGLQIMAIRYASALVCIVGFALARRGGVSACRSPRPFRHFSRAMMGGLGGACLIQG CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHCCCCHHHHCC VTLLPMAEASAIGLLDGVFSVILGIVLLGERVRPLRWLGVALSLVGGVLVIAGRADLSGL CHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEECCHHHHHH LDHLLAGGAVFYPLAGAAFVAMERVLMRQLALREGKMAILFHVNLFGTLILMPVALMTWV HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHC PLEGPTLALLIAFGPLALLGQFCNIRGFALAEVSITGPVWYSWLIFAAALGWVMFDEVPG CCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCC PGVILGGAVIALGGVFLCASGRKRTPALPADTLGPSETPGKAGRE CCEEHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure AVSSAAPRPGDRAAGAPDGAPDSAPDGAPDGVHDTARGVAWVLVACVIFTLVYASGRLA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC GGGVGGLQIMAIRYASALVCIVGFALARRGGVSACRSPRPFRHFSRAMMGGLGGACLIQG CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHCCCCHHHHCC VTLLPMAEASAIGLLDGVFSVILGIVLLGERVRPLRWLGVALSLVGGVLVIAGRADLSGL CHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEECCHHHHHH LDHLLAGGAVFYPLAGAAFVAMERVLMRQLALREGKMAILFHVNLFGTLILMPVALMTWV HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHC PLEGPTLALLIAFGPLALLGQFCNIRGFALAEVSITGPVWYSWLIFAAALGWVMFDEVPG CCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCC PGVILGGAVIALGGVFLCASGRKRTPALPADTLGPSETPGKAGRE CCEEHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11557893 [H]