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The map label for this gene is yeaM [H]

Identifier: 83593286

GI number: 83593286

Start: 2260062

End: 2260886

Strand: Reverse

Name: yeaM [H]

Synonym: Rru_A1951

Alternate gene names: 83593286

Gene position: 2260886-2260062 (Counterclockwise)

Preceding gene: 83593295

Following gene: 83593283

Centisome position: 51.94

GC content: 64.48

Gene sequence:

>825_bases
ATGGTCCTCTCACGATCCGCCGTCGCTGTTTTCGACCCCGATCTCACGGATCGGCCGGCGGTCGCCCGTCAGCTCGACTT
CGCCGACCACCAAGCGGAAGTGCCGATGCATGAGCATCGCAAAGGCCAGTTGATCCTCGCGCTGCATGGGGCGGTCACCT
GCACGGCGGACAACGAGATCTGGATCGTGCCGCCCAACTGCGCAGTCTGGATACCGGGCGGGGTACCCCATAGCGCCCGG
GCGACGGCGAATGCCCGGCTTACCTATCTCTTTGTGGAGCCGGGGGCGGCGAAGCTACCCGAGGAGTGTTGTACCCTGTC
GATCTCGCCCATGATCCGGGAAATGGTCGACCGGTTGGCGCGCGAGCCTGCCGACTATCCTTCGCATGGCCATGCGGCCC
GGCTGGCGAGGGTGGCTCTTGATGAACTGGTGGACATGCCGCGCGAGCGCTTCAACTTGCCTATCTCCGGCAATGCGAAG
ATCCGCGCGATAGCCGACGCTCTGACGGTCGACCCGTCCGACCGCAGCACCTTGGCCGAATGGGCCAAGCGCGTGGCGAT
GAGCGAGAGGTCGCTGGCCCGTTTGATGATCCGGGAGACGGGCTTGACCTTCGGACGCTGGCGGCAGCAATTGCACCTTG
TCGTTGCGCTTCGCCAACTGGCCGGTGGGGCGTCGGTGCACACCGTTGCCGCCGAGCTGGGCTACGAGTCGGTCAACGCC
TTCATCACGATGTTCAAGAAGGCGCTGGGGAGTACGCCCGCGCAGTATTTCGTAGAGCGCAGGGCGCTACCGCCTTCGAT
CCTAAAAGAAGGACGGCATGAGTGA

Upstream 100 bases:

>100_bases
TGTTGGCAGGAGGTGAGATGCTCATGCGAGCTATTATCACCGTCTTGCAAAAGTAGATAAATTCGGTATTCTGTCAAAAA
ATATCTAAAAGCTGCCAAAC

Downstream 100 bases:

>100_bases
TGGTTTTGCGCCTCTCGCTCGATCGTCCCCGAGGGTCCGTTTCGCCGGCCTGATCACCGGGGTTAGCCAAAGCCCGATCC
TGGAGGGCGAGACCGATCAG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MVLSRSAVAVFDPDLTDRPAVARQLDFADHQAEVPMHEHRKGQLILALHGAVTCTADNEIWIVPPNCAVWIPGGVPHSAR
ATANARLTYLFVEPGAAKLPEECCTLSISPMIREMVDRLAREPADYPSHGHAARLARVALDELVDMPRERFNLPISGNAK
IRAIADALTVDPSDRSTLAEWAKRVAMSERSLARLMIRETGLTFGRWRQQLHLVVALRQLAGGASVHTVAAELGYESVNA
FITMFKKALGSTPAQYFVERRALPPSILKEGRHE

Sequences:

>Translated_274_residues
MVLSRSAVAVFDPDLTDRPAVARQLDFADHQAEVPMHEHRKGQLILALHGAVTCTADNEIWIVPPNCAVWIPGGVPHSAR
ATANARLTYLFVEPGAAKLPEECCTLSISPMIREMVDRLAREPADYPSHGHAARLARVALDELVDMPRERFNLPISGNAK
IRAIADALTVDPSDRSTLAEWAKRVAMSERSLARLMIRETGLTFGRWRQQLHLVVALRQLAGGASVHTVAAELGYESVNA
FITMFKKALGSTPAQYFVERRALPPSILKEGRHE
>Mature_274_residues
MVLSRSAVAVFDPDLTDRPAVARQLDFADHQAEVPMHEHRKGQLILALHGAVTCTADNEIWIVPPNCAVWIPGGVPHSAR
ATANARLTYLFVEPGAAKLPEECCTLSISPMIREMVDRLAREPADYPSHGHAARLARVALDELVDMPRERFNLPISGNAK
IRAIADALTVDPSDRSTLAEWAKRVAMSERSLARLMIRETGLTFGRWRQQLHLVVALRQLAGGASVHTVAAELGYESVNA
FITMFKKALGSTPAQYFVERRALPPSILKEGRHE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=268, Percent_Identity=46.2686567164179, Blast_Score=244, Evalue=3e-66,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 30178; Mature: 30178

Theoretical pI: Translated: 8.04; Mature: 8.04

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLSRSAVAVFDPDLTDRPAVARQLDFADHQAEVPMHEHRKGQLILALHGAVTCTADNEI
CCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCCHHHCCCCCEEEEEECEEEEECCCEE
WIVPPNCAVWIPGGVPHSARATANARLTYLFVEPGAAKLPEECCTLSISPMIREMVDRLA
EEECCCCEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHEECCCHHHHHHHHHHH
REPADYPSHGHAARLARVALDELVDMPRERFNLPISGNAKIRAIADALTVDPSDRSTLAE
HCCCCCCCCCHHHHHHHHHHHHHHHCCHHHCCCCCCCCCEEEEEEHHHCCCCCCHHHHHH
WAKRVAMSERSLARLMIRETGLTFGRWRQQLHLVVALRQLAGGASVHTVAAELGYESVNA
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHH
FITMFKKALGSTPAQYFVERRALPPSILKEGRHE
HHHHHHHHHCCCHHHHHHHHHCCCHHHHHCCCCC
>Mature Secondary Structure
MVLSRSAVAVFDPDLTDRPAVARQLDFADHQAEVPMHEHRKGQLILALHGAVTCTADNEI
CCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCCHHHCCCCCEEEEEECEEEEECCCEE
WIVPPNCAVWIPGGVPHSARATANARLTYLFVEPGAAKLPEECCTLSISPMIREMVDRLA
EEECCCCEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHEECCCHHHHHHHHHHH
REPADYPSHGHAARLARVALDELVDMPRERFNLPISGNAKIRAIADALTVDPSDRSTLAE
HCCCCCCCCCHHHHHHHHHHHHHHHCCHHHCCCCCCCCCEEEEEEHHHCCCCCCHHHHHH
WAKRVAMSERSLARLMIRETGLTFGRWRQQLHLVVALRQLAGGASVHTVAAELGYESVNA
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHH
FITMFKKALGSTPAQYFVERRALPPSILKEGRHE
HHHHHHHHHCCCHHHHHHHHHCCCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]